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| Status |
Public on Jul 11, 2023 |
| Title |
Mapping the dynamics of epigenetic adaptation during heterochromatin misregulation |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jun 26, 2023 |
| Last update date |
Jun 12, 2024 |
| Contact name |
Ajay Larkin |
| E-mail(s) |
ajaylarkin@brandeis.edu
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| Organization name |
Brandeis University
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| Department |
MCB
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| Lab |
Ragunathan Lab
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| Street address |
415 South St
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| City |
Waltham |
| State/province |
MA |
| ZIP/Postal code |
02453 |
| Country |
USA |
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| Platforms (2) |
| GPL20584 |
Illumina NextSeq 500 (Schizosaccharomyces pombe) |
| GPL28961 |
Illumina NovaSeq 6000 (Schizosaccharomyces pombe) |
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| Samples (48)
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| GSM7509831 |
mst2D epe1-deg,-TN, input rep2 |
| GSM7509832 |
mst2D epe1-deg,+TN 24hrs H3K9me3 , rep1 |
| GSM7509833 |
mst2D epe1-deg,+TN 24hrs input , rep1 |
| GSM7509834 |
mst2D epe1-deg,+TN 24hrs H3K9me3 , rep2 |
| GSM7509835 |
mst2D epe1-deg,+TN 24hrs input , rep2 |
| GSM7509836 |
mst2D epe1-deg,+TN 48hrs H3K9me3 , rep1 |
| GSM7509837 |
mst2D epe1-deg,+TN 48hrs input , rep1 |
| GSM7509838 |
mst2D epe1-deg,+TN 48hrs H3K9me3 , rep2 |
| GSM7509839 |
mst2D epe1-deg,+TN 48hrs input , rep2 |
| GSM7509840 |
mst2D epe1-deg,+TN 72hrs H3K9me3 , rep1 |
| GSM7509841 |
mst2D epe1-deg,+TN 72hrs input , rep1 |
| GSM7509842 |
mst2D epe1-deg,+TN 72hrs H3K9me3 , rep2 |
| GSM7509843 |
mst2D epe1-deg,+TN 72hrs input , rep2 |
| GSM7509844 |
mst2D epe1-deg,+TN 96hrs H3K9me3 , rep1 |
| GSM7509845 |
mst2D epe1-deg,+TN 96hrs input , rep1 |
| GSM7509846 |
mst2D epe1-deg,+TN 96hrs H3K9me3 , rep2 |
| GSM7509847 |
mst2D epe1-deg,+TN 96hrs input , rep2 |
| GSM7509848 |
mst2D epe1-deg,+TN 120hrs H3K9me3 , rep1 |
| GSM7509849 |
mst2D epe1-deg,+TN 120hrs input , rep1 |
| GSM7509850 |
mst2D epe1-deg,+TN 120hrs H3K9me3 , rep2 |
| GSM7509851 |
mst2D epe1-deg,+TN 120hrs input , rep2 |
| GSM7509852 |
mst2D epe1-deg,-TN, rep1 |
| GSM7509853 |
mst2D epe1-deg,-TN, rep2 |
| GSM7509854 |
mst2D epe1-deg,-TN, rep3 |
| GSM7509855 |
mst2D epe1-deg,+TN 24hrs, rep1 |
| GSM7509856 |
mst2D epe1-deg,+TN 24hrs, rep2 |
| GSM7509857 |
mst2D epe1-deg,+TN 24hrs, rep3 |
| GSM7509858 |
mst2D epe1-deg,+TN 48hrs, rep1 |
| GSM7509859 |
mst2D epe1-deg,+TN 48hrs, rep2 |
| GSM7509860 |
mst2D epe1-deg,+TN 48hrs, rep3 |
| GSM7509861 |
mst2D epe1-deg,+TN 72hrs, rep1 |
| GSM7509862 |
mst2D epe1-deg,+TN 72hrs, rep2 |
| GSM7509863 |
mst2D epe1-deg,+TN 72hrs, rep3 |
| GSM7509864 |
mst2D epe1-deg,+TN 96hrs, rep1 |
| GSM7509865 |
mst2D epe1-deg,+TN 96hrs, rep2 |
| GSM7509866 |
mst2D epe1-deg,+TN 96hrs, rep3 |
| GSM7509867 |
mst2D epe1-deg,+TN 120hrs, rep1 |
| GSM7509868 |
mst2D epe1-deg,+TN 120hrs, rep2 |
| GSM7509869 |
mst2D epe1-deg,+TN 120hrs, rep3 |
| GSM7509876 |
mst2Depe1D biological replicate 1 rep1 |
| GSM7509877 |
mst2Depe1D biological replicate 1 rep2 |
| GSM7509878 |
mst2Depe1D biological replicate 1 rep3 |
| GSM7509879 |
mst2Depe1D biological replicate 2 rep1 |
| GSM7509880 |
mst2Depe1D biological replicate 2 rep2 |
| GSM7509881 |
mst2Depe1D biological replicate 2 rep3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE235806 |
Mapping the dynamics of epigenetic adaptation during heterochromatin misregulation [ChIP-seq] |
| GSE235807 |
Mapping the dynamics of epigenetic adaptation during heterochromatin misregulation [RNA-seq] |
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| Relations |
| BioProject |
PRJNA987650 |
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