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Series GSE243647 Query DataSets for GSE243647
Status Public on Nov 13, 2023
Title Incorporation of human iPS cell-derived stroma creates a pancreatic cancer organoid with heterogeneous cancer-associated fibroblasts [AmpliSeq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The aggressiveness of pancreatic ductal adenocarcinoma (PDAC) is affected by a tumor microenvironment (TME). In this study, to recapitulate PDAC TME ex vivo, we cocultured patient-derived PDAC cells with mesenchymal and vascular endothelial cells derived from human induced-pluripotent stem cells (hiPSCs) to create a fused pancreatic cancer organoid (FPCO) in air–liquid interface. FPCOs were further induced to resemble two distinct parts of a PDAC tissue. Owing to various types of cancer associated fibroblasts (CAFs) derived from hiPSCs, the TME consisted of abundant extracellular matrix proteins, which likely conferred strong drug resistance to PDAC cells in one type of FPCOs. Because of re-proliferation capacity of PDAC cells after anticancer drug treatment, the other FPCO is the first culture system for investigating PDAC recurrence. Introducing hiPSC technology, we have created, for the first time, the PDAC organoids representing the heterogeneity of PDAC tissue, a potential platform for screening anticancer drugs.
 
Overall design Two types of fused pancreatic cancer organoid (FPCO) generated by patiend-derived pancreatic cancer organoids(PCOs), hiPSC-derived mesenchymal cells (hiPSC-MC) and vascular endothelial cells (hiPSC-EC), and their materials. In addintion, bone marrow mesenchymal stem cell (BMMSC) and patient-derived cancer associated fibroblast (CAF) as comparison target with FPCO-CAF.
Web link https://doi.org/10.1016/j.celrep.2023.113420
 
Contributor(s) Takeuchi K, Tabe S, Takahashi K, Matsuo M, Ueno Y, Furukawa Y, Yamaguchi K, Ohtsuka M, Morinaga S, Miyagi Y, Yamaguchi T, i Tanimizu N, Taniguchi H
Citation(s) 37955987
Submission date Sep 20, 2023
Last update date Feb 12, 2024
Contact name kenta takeuchi
E-mail(s) kentasyu@g.ecc.u-tokyo.ac.jp
Phone 0354495698
Organization name The Institute of Medical Science, The University of Tokyo
Street address 4-6-1, Shirokanedai
City Minato Ku
State/province Tokyo To
ZIP/Postal code 108-0071
Country Japan
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (31)
GSM7792273 PCO_replicate1
GSM7792274 PCO_replicate2
GSM7792275 PCO_replicate3
This SubSeries is part of SuperSeries:
GSE243651 Incorporation of human iPS cell-derived stroma creates a pancreatic cancer organoid with heterogeneous cancer-associated fibroblasts
Relations
BioProject PRJNA1019325

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243647_CombineAlignments_CA_001.bc_summary.csv.gz 307 b (ftp)(http) CSV
GSE243647_CombineAlignments_CA_001.rpm.bcmatrix.csv.gz 2.1 Mb (ftp)(http) CSV
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Raw data are available in SRA

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