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Series GSE248732 Query DataSets for GSE248732
Status Public on Mar 04, 2024
Title Replication timing for the replication fountains
Organism Homo sapiens
Experiment type Other
Summary This dataset includes replication timing of WT K562 cells and cells with or without 600 nM Aphidicolin treatment.
 
Overall design Cells were treated with or without 600 nM treatement for 16 hours, BrdU for 1 or 3 hours, Hochest33342 for 30 minutes, and then sorted into 6 fractions, according to the DNA content. After that, genomic DNA was isolated and applied for Repli-seq analysis.
 
Contributor(s) Liu Y, Zhangding Z, Liu X, Hu J
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 27, 2023
Last update date Mar 05, 2024
Contact name Yang Liu
E-mail(s) liu.y@pku.edu.cn
Organization name School of life sciences, Peking University
Lab Jiazhi Hu lab
Street address Yiheyuan Road, No. 5
City Beijing
ZIP/Postal code 100871
Country China
 
Platforms (2)
GPL20795 HiSeq X Ten (Homo sapiens)
GPL30209 MGISEQ-2000RS (Homo sapiens)
Samples (18)
GSM7919213 Repli-seq-WT-for-q3C-S1
GSM7919214 Repli-seq-WT-for-q3C-S2
GSM7919215 Repli-seq-WT-for-q3C-S3
Relations
BioProject PRJNA1045676

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE248732_RAW.tar 20.8 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA

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