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| Status |
Public on Sep 01, 2011 |
| Title |
Affymetrix SNP array data for oral squamous cell carcinoma |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
SNP genotyping by SNP array
|
| Summary |
In order to identify biomarkers that contribute to genetic causes of OSCC, we attempt to identify copy number variation regions (CNV) in patients with OSCC. We identified and confirmed the clinical significance of amplification regions scattered from 8q22.2 to 8q24.3.
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| Overall design |
Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from normal oral tissues and OSCC specimens.
Copy number analysis of Affymetrix SNP 6.0 arrays was performed for 112 OSCC specimens and 10 non-cancerous samples.
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| Contributor(s) |
Peng C, Liao C, Chen Y, Cheng A, Juang J, Tsai C, Hsieh W, Yen T |
| Citation(s) |
21853135, 26087196 |
| Submission date |
Nov 03, 2010 |
| Last update date |
Oct 09, 2019 |
| Contact name |
Chien-Hua Peng |
| Organization name |
Chang Gung Memorial Hospital
|
| Street address |
No. 5, Fu-Hsing ST.
|
| City |
Taoyuan |
| ZIP/Postal code |
33305 |
| Country |
Taiwan |
| |
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| Platforms (1) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
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| Samples (122)
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| This SubSeries is part of SuperSeries: |
| GSE25104 |
Expression and SNP array data for oral squamous cell carcinoma |
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| Relations |
| BioProject |
PRJNA142781 |
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