|
| Status |
Public on Nov 11, 2010 |
| Title |
BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS |
| Project |
Roadmap Epigenomics
|
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Characterization of the reference epigenome in humans in a diverse panel of ES cells, tissue stem cells, reprogrammed stem cells, primary cells and tissues.
****************
For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
****************
|
| |
|
| Overall design |
BI Human Reference Epigenome Mapping Project - samples and experiments will continue to be added to this study over the course of the project.
EDACC Genboree Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FBroad%2FSTUDY%2FEDACC.1899
|
| Web link |
http://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/
|
| |
|
| Contributor(s) |
Bernstein BE, Meissner A |
| Citation(s) |
20944595 |
| BioProject |
PRJNA34535 |
| Submission date |
Nov 09, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
BROAD INSTITUTE |
| E-mail(s) |
rharris1@bcm.tmc.edu
|
| Organization name |
Broad Institute
|
| Street address |
-
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (10)
|
| GSM621345 |
Bisulfite-Seq analysis of RRBS368 derived from human hES I3 TESR cells; 42LNLAAXX090804-1-S |
| GSM621347 |
Bisulfite-Seq analysis of RRBS350 derived from human WA-7 cells; 30J03AAXX090718-7-S |
| GSM621348 |
Bisulfite-Seq analysis of RRBS348 derived from human hES-I3 cells; 30J03AAXX090718-6-S |
| GSM621353 |
Bisulfite-Seq analysis of RRBS528 derived from human WA-7 cells; 42TVLAAXX100212-1-S |
| GSM621357 |
Bisulfite-Seq analysis of RRBS360 derived from human H1 cells; 42R88AAXX091028-3-S |
| GSM621763 |
Bisulfite-Seq analysis of RRBS534 derived from human H1 cells; RRBS534 |
| GSM621765 |
Bisulfite-Seq analysis of RRBS677 derived from human H1 cells; RRBS677 |
| GSM621767 |
Bisulfite-Seq analysis of RRBS569 derived from human HUES3 cells; RRBS569 |
| GSM669899 |
Bisulfite-Seq analysis of RRBS956 derived from human Neural progenitors derived from ES H9 cell cells; RRBS956 |
| GSM669901 |
Bisulfite-Seq analysis of RRBS747 derived from human H9 cells; RRBS747 |
|
| Relations |
| SRA |
SRP004506 |
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