NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE253956 Query DataSets for GSE253956
Status Public on Feb 01, 2024
Title Repositioning the early pathology of type 1 diabetes to the extra-islet vasculature.
Organism Mus musculus
Experiment type Expression profiling by RT-PCR
Summary Repositioning the early pathology of type 1 diabetes to the extra-islet vasculature.
 
Overall design Blood was obtained from NOD mice via retro-orbital bleeding. Blood was then ficolled and PBMCs were isolated. CD4 T cells were then single cell sorted from PBMCs via MHC tetramers. Macrophages and Endothelial cells were isolated from pancreatic islets. In short, pancraetic islets were isolated form NOD pancreas via tissue harvesting and processing via enzymatic digestion and ficoll.
Cells were either sorted with pMHC tetramers or antibody surface staining.
There is no processed data file because all analysis was completed using custom R scripts and there is no need for normalization of our data.
 
Contributor(s) Teyton L
Citation(s) 38426888
Submission date Jan 23, 2024
Last update date Apr 02, 2024
Contact name Luc Teyton
E-mail(s) lteyton@scripps.edu
Organization name Scripps Research
Department Immunology and Microbiology
Lab Teyton Lab
Street address 10550 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE253956_EC1.csv.gz 31.4 Kb (ftp)(http) CSV
GSE253956_EC2.csv.gz 32.3 Kb (ftp)(http) CSV
GSE253956_Mp3.csv.gz 26.7 Kb (ftp)(http) CSV
GSE253956_Mp4.csv.gz 27.5 Kb (ftp)(http) CSV
GSE253956_blood7W12-20.csv.gz 110.0 Kb (ftp)(http) CSV
GSE253956_blood8W12-20M1and2.csv.gz 133.9 Kb (ftp)(http) CSV
GSE253956_macrophage_1_1.csv.gz 43.0 Kb (ftp)(http) CSV
GSE253956_macrophage_1_2.csv.gz 50.1 Kb (ftp)(http) CSV
GSE253956_macrophage_3_1.csv.gz 40.2 Kb (ftp)(http) CSV
GSE253956_macrophage_3_2.csv.gz 41.3 Kb (ftp)(http) CSV
GSE253956_macrophage_4_1.csv.gz 42.2 Kb (ftp)(http) CSV
GSE253956_macrophage_4_2.csv.gz 42.0 Kb (ftp)(http) CSV
GSE253956_sample_descriptions.txt.gz 2.3 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap