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Series GSE257784

Query DataSets for GSE257784

Status

Public on Feb 27, 2024

Title

Mint-ChIP-seq from brain (ENCSR385SSH)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR385SSH/

Citation(s)

22955616

BioProject

PRJNA63443

Submission date

Feb 25, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL16791

Illumina HiSeq 2500 (Homo sapiens)

Samples (6)

More...

GSM8108552	Mint-ChIP-seq from brain (ENCLB582OSH)
GSM8108553	Mint-ChIP-seq from brain (ENCLB521ORC)
GSM8108554	Mint-ChIP-seq from brain (ENCLB648WDN)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257784_ENCFF023VNB_pseudoreplicated_peaks_GRCh38.bigBed	11.5 Mb	(ftp)(http)	BIGBED
GSE257784_ENCFF045NTI_replicated_peaks_GRCh38.bed.gz	5.6 Mb	(ftp)(http)	BED
GSE257784_ENCFF099QER_fold_change_over_control_GRCh38.bigWig	3.7 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF100XGO_pseudoreplicated_peaks_GRCh38.bed.gz	6.4 Mb	(ftp)(http)	BED
GSE257784_ENCFF117XSB_signal_p-value_GRCh38.bigWig	2.4 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF141PTF_pseudoreplicated_peaks_GRCh38.bed.gz	5.6 Mb	(ftp)(http)	BED
GSE257784_ENCFF149HQP_replicated_peaks_GRCh38.bed.gz	5.7 Mb	(ftp)(http)	BED
GSE257784_ENCFF159RMM_fold_change_over_control_GRCh38.bigWig	2.4 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF237MYM_signal_p-value_GRCh38.bigWig	3.6 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF303ZQL_replicated_peaks_GRCh38.bigBed	9.4 Mb	(ftp)(http)	BIGBED
GSE257784_ENCFF342NTM_pseudoreplicated_peaks_GRCh38.bed.gz	5.6 Mb	(ftp)(http)	BED
GSE257784_ENCFF370BRR_fold_change_over_control_GRCh38.bigWig	5.0 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF410NQK_replicated_peaks_GRCh38.bed.gz	6.5 Mb	(ftp)(http)	BED
GSE257784_ENCFF499JPA_fold_change_over_control_GRCh38.bigWig	3.8 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF558IGI_replicated_peaks_GRCh38.bigBed	9.5 Mb	(ftp)(http)	BIGBED
GSE257784_ENCFF616PVE_signal_p-value_GRCh38.bigWig	2.2 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF674JTC_replicated_peaks_GRCh38.bigBed	10.5 Mb	(ftp)(http)	BIGBED
GSE257784_ENCFF676LNW_pseudoreplicated_peaks_GRCh38.bigBed	10.8 Mb	(ftp)(http)	BIGBED
GSE257784_ENCFF678YIM_signal_p-value_GRCh38.bigWig	2.4 Gb	(ftp)(http)	BIGWIG
GSE257784_ENCFF836GRC_pseudoreplicated_peaks_GRCh38.bed.gz	8.5 Mb	(ftp)(http)	BED
GSE257784_ENCFF841EGJ_pseudoreplicated_peaks_GRCh38.bigBed	13.8 Mb	(ftp)(http)	BIGBED
GSE257784_ENCFF893FKA_pseudoreplicated_peaks_GRCh38.bigBed	9.8 Mb	(ftp)(http)	BIGBED
GSE257784_RAW.tar	20.0 Kb	(http)(custom)	TAR (of TXT)
Raw data are available in SRA