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| Status |
Public on May 01, 2024 |
| Title |
Melanization of fungal necromass drives the upregulation of multiple chitinase, protease, and laccase genes when being degraded by Trichoderma reesei |
| Organism |
Trichoderma reesei |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Fungal necromass in soil represents the stable carbon pools. While fungi are known to decompose fungal necromass, how fungi decomopose melanin, remains poorly understood. Recently, Trichoderma species was found to be one of the most commonly associated fungi in soil, we have used a relevant fungal species, Trichoderma reesei, to characterized Genes involved in the decomposition of melanized and non-melanized necromass from Hyaloscypha bicolor.
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| Overall design |
We grew Trichoderma reesei RUT-C30 in liquid cultures with low- and high-melanin necromass and Determined gene expression patterns relative to each other. We also compared the expression pattern to that on glucose carbon source.
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| Contributor(s) |
Haq IU, Kennedy P, Schilling J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 09, 2024 |
| Last update date |
May 01, 2024 |
| Contact name |
Jonathan Schilling |
| E-mail(s) |
schillin@umn.edu
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| Organization name |
University of Minnesota
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| Department |
Plant and Microbial Biology
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| Lab |
Schilling lab
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| Street address |
1445 Gortner Avenue
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| City |
Saint Paul |
| State/province |
Minnesota |
| ZIP/Postal code |
55108 |
| Country |
USA |
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| Platforms (1) |
| GPL34370 |
Illumina HiSeq 4000 (Trichoderma reesei) |
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| Samples (9)
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| GSM8193890 |
LM1Tr, fungal biomass, low-melanin necromass, rep1 |
| GSM8193891 |
LM2Tr, fungal biomass, low-melanin necromass, rep2 |
| GSM8193892 |
LM3Tr, fungal biomass, low-melanin necromass, rep3 |
| GSM8193893 |
TrHM1, fungal biomass, high-melanin necromass, rep1 |
| GSM8193894 |
TrHM2, fungal biomass, high-melanin necromass, rep2 |
| GSM8193895 |
TrHM3, fungal biomass, high-melanin necromass, rep3 |
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| Relations |
| BioProject |
PRJNA1097855 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE263516_raw_counts.csv.gz |
187.4 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
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