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| Status |
Public on Aug 04, 2011 |
| Title |
Expression data from Tcf1 deficient and Tcf1 wildtype cultured bone marrow lymphoid primed progenitors after four days on Notch ligand expressing stroma (OP9-DL4). |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Tcf1 is necessary for optimal T lineage development. Tcf1 deficient progenitors fail to initiate the T lineage program in vitro and development is severely defective in vivo. We used microarrays to assess the overal global gene expression differences from Tcf1 wildtype and deficient lymphoid biased progenitors cultures on Notch-ligand expressing stroma to determine if Tcf1 deficient progenitors are able to intiate the T lineage specification program.
Abstract of manuscript: The thymus imposes the T cell fate on incoming multipotent progenitors, but the molecular mechanisms are poorly understood. We show that transcription factor Tcf1 initiates T-lineage-specific gene expression. Tcf1 is downstream of Notch1 signaling and expressed in early T-cell progenitors. Progenitors deficient for Tcf1 are unable to initiate normal T-lineage specification. Conversely, ectopic expression of Tcf1 in hematopoietic progenitors is sufficient to induce expression of T-lineage specific genes in vitro. Thus, our study identifies Tcf1 as critically involved in the establishment T cell identity.
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| Overall design |
Tcf1 wildtype and deficient bone marrow lymphoid primed progenitors (LMPPs, Lineage marker- Sca+kit+Flt3high) were harvested in triplicate and seeded onto OP9-DL4 expressing stroma for 4 days upon which highly pure lineage negative and Thy1+CD25+ T cells were cell sorted for expression analysis. The lineage negative populations represent three seperate mice from each genotype and the Thy1+CD25+T lineage population represents two replicates from the Tcf1 wildtype group. No Thy1+CD25+ T lineage cells develop from Tcf1 deficient progentiors.
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| Contributor(s) |
Brittany W, Anthony C, Alex C, Yumi Y, Avinash B |
| Citation(s) |
21814277 |
| Submission date |
Jan 11, 2011 |
| Last update date |
Mar 04, 2019 |
| Contact name |
Avinash Bhandoola |
| E-mail(s) |
bhandooa@mail.med.upenn.edu
|
| Phone |
2155730274
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| Organization name |
University of Pennsylvania
|
| Department |
Pathology
|
| Lab |
266 John Morgan
|
| Street address |
3620 Hamilton Walk
|
| City |
Philadelphia |
| State/province |
Philadelphia |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platforms (1) |
| GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
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| Samples (8)
|
| GSM652987 |
Tcf1 deficient Lineage negative cells (Mac1-Gr1-Thy1-CD25-) biological replicate 1 |
| GSM652988 |
Tcf1 deficient Lineage negative cells (Mac1-Gr1-Thy1-CD25-) biological replicate 2 |
| GSM652989 |
Tcf1 deficient Lineage negative cells (Mac1-Gr1-Thy1-CD25-) biological replicate 3 |
| GSM652990 |
Tcf1 wildtype Lineage negative cells (Mac1-Gr1-Thy1-CD25-) biological replicate 1 |
| GSM652991 |
Tcf1 wildtype Lineage negative cells (Mac1-Gr1-Thy1-CD25-) biological replicate 2 |
| GSM652992 |
Tcf1 wildtype Lineage negative cells (Mac1-Gr1-Thy1-CD25-) biological replicate 3 |
| GSM652993 |
Tcf1 wildtype T lineage cells (Thy1+CD25+) biological replicate 1 |
| GSM652994 |
Tcf1 wildtype T lineage cells (Thy1+CD25+) biological replicate 2 |
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| Relations |
| BioProject |
PRJNA136223 |
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