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GEO help: Mouse over screen elements for information. |
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Status |
Public on Mar 30, 2011 |
Title |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells |
Organism |
Mus musculus |
Experiment type |
Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
21451524, 21460036 |
Submission date |
Jan 24, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Hao Wu |
E-mail(s) |
haowu7@gmail.com
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Phone |
617-713-8660
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Organization name |
Harvard Medical School/HHMI
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Department |
Genetics
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Lab |
Yi Zhang
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Street address |
149G Warren Alpert Building, 200 Longwood Avenue
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City |
Boston |
State/province |
Massachusetts |
ZIP/Postal code |
02115 |
Country |
USA |
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Platforms (6)
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GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
GPL7523 |
NimbleGen mouse (mm8) whole genome tiling array 1 of 4 [2007-08-17_MM8_Economy_01] |
GPL7524 |
NimbleGen mouse (mm8) whole genome tiling array 2 of 4 [2007-08-17_MM8_Economy_02] |
GPL7525 |
NimbleGen mouse (mm8) whole genome tiling array 3 of 4 [2007-08-17_MM8_Economy_03] |
GPL7526 |
NimbleGen mouse (mm8) whole genome tiling array 4 of 4 [2007-08-17_MM8_Economy_04] |
GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
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Samples (38)
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GSM659630 |
Con KD ES cells, DNA methylation by MeDIP-chip (1/4) |
GSM659631 |
Con KD ES cells, DNA methylation by MeDIP-chip (2/4) |
GSM659632 |
Con KD ES cells, DNA methylation by MeDIP-chip (3/4) |
GSM659633 |
Con KD ES cells, DNA methylation by MeDIP-chip (4/4) |
GSM659634 |
Tet1 KD ES cells, DNA methylation by MeDIP-chip (1/4) |
GSM659635 |
Tet1 KD ES cells, DNA methylation by MeDIP-chip (2/4) |
GSM659636 |
Tet1 KD ES cells, DNA methylation by MeDIP-chip (3/4) |
GSM659637 |
Tet1 KD ES cells, DNA methylation by MeDIP-chip (4/4) |
GSM659638 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (1/4), exp1 |
GSM659639 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (2/4), exp1 |
GSM659640 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (3/4), exp1 |
GSM659641 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (4/4), exp1 |
GSM659642 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (1/4), exp2 |
GSM659643 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (2/4), exp2 |
GSM659644 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (3/4), exp2 |
GSM659645 |
Con KDvsTet1 KD ES cells, DNA methylation by MeDIP-chip (4/4), exp2 |
GSM659646 |
Con KDvsTet1 KD ES cells, Ezh2 ChIP-chip (1/4) |
GSM659647 |
Con KDvsTet1 KD ES cells, Ezh2 ChIP-chip (2/4) |
GSM659648 |
Con KDvsTet1 KD ES cells, Ezh2 ChIP-chip (3/4) |
GSM659649 |
Con KDvsTet1 KD ES cells, Ezh2 ChIP-chip (4/4) |
GSM659775 |
Control KD, rep1 |
GSM659776 |
Control KD, rep2 |
GSM659777 |
Control KD, rep3 |
GSM659778 |
Control KD, rep4 |
GSM659779 |
Tet1 KD, rep1 |
GSM659780 |
Tet1 KD, rep2 |
GSM659781 |
Tet1 KD, rep3 |
GSM659782 |
Tet1 KD, rep4 |
GSM659783 |
Tet1 KD + Nanog overexpression (OE), rep1 |
GSM659784 |
Tet1 KD + Nanog overexpression (OE), rep2 |
GSM659785 |
Tet1 KD + Nanog overexpression (OE), rep3 |
GSM659786 |
Tet1 KD + Nanog overexpression (OE), rep4 |
GSM659799 |
Tet1_exp1 no KD |
GSM659800 |
Tet1_exp2 mock KD |
GSM659801 |
Tet1_exp3 Tet1 KD |
GSM659802 |
Tet1_exp4 Tet1 KD |
GSM659803 |
IgG_exp1 no KD |
GSM659804 |
IgG_exp2 mock KD |
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This SuperSeries is composed of the following SubSeries: |
GSE26827 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (ChIP-chip and MeDIP-chip) |
GSE26830 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (mRNA) |
GSE26832 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (ChIP-Seq) |
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Relations |
BioProject |
PRJNA136039 |
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