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Series GSE27580 Query DataSets for GSE27580
Status Public on Nov 16, 2011
Title An interspecies analysis reveals sequence determinants of the bivalent chromatin state
Organisms Mus musculus; Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The sequence determinants of chromatin bivalency remain unclear. We analysed sequence determinants of chromatin bivalency genome-wide in several mammalian species and performed a series of transgenic experiments in mouse ES cells.
 
Overall design Genome-wide mapping of H3K27me3 in rat ES cells and ChIP-seq with anti-Ezh2 antibody in transgenic mouse ES cells
 
Contributor(s) Lynch M
Citation(s) 22056776
Submission date Mar 01, 2011
Last update date Mar 08, 2019
Contact name Magnus David Lynch
Organization name Weatherall Institute of Molecular Medicine
Department Molecular Haematology Unit
Lab Higgs
Street address John Radcliffe Hospital
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platforms (2)
GPL9185 Illumina Genome Analyzer (Mus musculus)
GPL11282 Illumina Genome Analyzer (Rattus norvegicus)
Samples (2)
GSM683730 h3k27me3_rates
GSM683731 ezh2_transgenic
Relations
BioProject PRJNA138375

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE27580_RAW.tar 4.5 Gb (http)(custom) TAR (of SAM)
Processed data provided as supplementary file

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