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Series GSE29006 Query DataSets for GSE29006
Status Public on Jun 01, 2011
Title mRNA-seq of Human Airway Epithelial Cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary mRNA expression was profiled from pooled bronchial airway epithelial cell brushings (n=3 patients/pool) obtained during bronchoscopy from healthy never (NS) and current smokers (S) and smokers with (C) and without (NC) lung cancer
 
Overall design 4 samples were sequened, each representing a pool of 3 patients. The phenotypes of the 4 samples were as follows: healthy non-smoker, healthy smoker, smoker without lung cancer and smoker with lung cancer.
 
Contributor(s) Beane J
Citation(s) 21636547
Submission date May 02, 2011
Last update date May 15, 2019
Contact name Avrum Spira
E-mail(s) aspira@lung.bumc.bu.edu
Phone 617-638-4860
Fax 617-536-8093
URL http://www.pulmonomics.org
Organization name Boston University Medical Center
Department Pulmonary and Critical Care Medicine
Lab Pulmonomics Lab
Street address 715 Albany Street, R304
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (8)
GSM718707 Healthy non-smoker (NS_Illumina)
GSM718708 Healthy smoker (S_Illumina)
GSM718709 Smoker without Lung Cancer (NC_Illumina)
This SubSeries is part of SuperSeries:
GSE29007 Human Large Airway Epithelial Cells from healthy never and current smoker and smokers with and without lung cancer
Relations
SRA SRP006676
BioProject PRJNA153969

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29006_Ensembl59_Scripture.gtf.gz 4.5 Mb (ftp)(http) GTF
GSE29006_RAW.tar 493.6 Mb (http)(custom) TAR (of BEDGRAPH, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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