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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 10, 2012 |
| Title |
Genome-wide profiling of gene expression of normal and Tbx20 knockout adult mouse whole heart |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Tbx20 is a transcription factor important for heart development. To assess the role of Tbx20 in the adult heart, we generated a conditional knockout for this gene, specifically in cardiomyocytes. We profiled gene expression levels using RNA-seq in both normal and knockout adult mouse hearts to identify genes and pathways regulated by Tbx20. The article describing the Tbx20 knockout mouse is under review, a reference will be added when published.
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| Overall design |
Analysis of triplicate mRNA samples of adult mouse, comparing normal and knockout
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| Contributor(s) |
Aneas I, Sakabe NJ, Nobrega MA, Shen T, Evans S |
| Citation(s) |
22328084 |
| Submission date |
Jul 26, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Noboru Jo Sakabe |
| Organization name |
University of Chicago
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| Department |
Human Genetics
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| Street address |
920 E 58th st
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| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60615 |
| Country |
USA |
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| Platforms (1) |
| GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
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| Samples (10)
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| Relations |
| SRA |
SRP007579 |
| BioProject |
PRJNA146301 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE30943_RAW.tar |
70.0 Kb |
(http)(custom) |
TAR (of BED, TXT) |
| GSE30943_read_counts_per_gene.txt.gz |
287.9 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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