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Series GSE31720 Query DataSets for GSE31720
Status Public on Sep 19, 2011
Title ENCODE SUNY RNA Binding Protein GeneST Data for HepG2
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by array
Summary RNA Binding Protein immunoprecipitation study for multiple target proteins in HepG2 cell line as part of the ENCODE consortium. Analyzed data tracks available for view on UCSC Genome browser.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design Three sample replicates per sample type. Total input RNA and Negative target RIP (antibody for bacteriophage coat protein) are provided as controls. Individual samples reflect biological replicates defined as separate RIP runs (as opposed to technical replicate defined as multiple arrays run with same RIP sample as starting material)
Web link http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Tenenbaum SA, Doyle FJ, Jayaseelan S, Chittur SV
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA30709
Submission date Aug 29, 2011
Last update date Jul 26, 2018
Contact name Frank Doyle
Organization name UAlbany CNSE
Department Nanobiology
Lab Tenenbaum
Street address 257 Fuller Rd
City Albany
State/province NY
ZIP/Postal code 12203
Country USA
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (12)
GSM787608 HepG2 Total RNA Rep1
GSM787609 HepG2 Total RNA Rep2
GSM787610 HepG2 Total RNA Rep3
This SubSeries is part of SuperSeries:
GSE31724 ENCODE SUNY RNA Binding Protein GeneST Data for various cell lines

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31720_RAW.tar 50.4 Mb (http)(custom) TAR (of BROADPEAK, CEL)
Processed data included within Sample table

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