|
| Status |
Public on Dec 01, 2012 |
| Title |
RIPSEQ DNMT1 HL60 |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Identification of the all RNA species associated with DNMT1. Using a comparative genome-scale approach we identified and correlated the RNA species physically associated with DNMT1 and proximal to the annotated genes to the methylation status of the corresponding loci and expression levels of the respective genes. This comparative approach delineated the first -DNMT1 centered- 'epitranscriptome' map, a comprehensive map cross-referencing DNMT1-interacting transcripts to (i) DNA methylation and (ii) gene expression profile.
|
| |
|
| Overall design |
Relationship between DNMT1-RNA interactions, DNA methylation and gene expression
|
| |
|
| Contributor(s) |
Di Ruscio A, Ebralidze AK, Benoukraf T, Wu M, Tenen DG |
| Citation(s) |
24107992 |
| Submission date |
Sep 15, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Touati Benoukraf |
| E-mail(s) |
tbenoukraf@mun.ca
|
| Phone |
+1 (709) 864-6671
|
| Organization name |
Memorial University of Newfoundland
|
| Department |
Faculty of Medicine, Discipline of Genetics
|
| Street address |
Craig L. Dobbin Genetics Research Centre,
|
| City |
St. John's |
| State/province |
NL |
| ZIP/Postal code |
A1B 3V6 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (2) |
|
| This SubSeries is part of SuperSeries: |
| GSE32260 |
Relationship between DNMT1-RNA interactions, DNA methylation and gene expression |
|
| Relations |
| SRA |
SRP009094 |
| BioProject |
PRJNA154943 |
