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Series GSE33153 Query DataSets for GSE33153
Status Public on Mar 28, 2012
Title Copy number analysis of high-grade osteosarcoma
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary We performed copy number analysis of high-grade osteosarcoma samples. in order to detect osteosarcoma drivers, we integrated these data with genome-wide gene expression data. We performed two different methods - a non-paired and a paired integrative analysis.
 
Overall design Copy number analysis was performed on 32 pre-treatment high-grade osteosarcoma diagnostic biopsies, of which 29 overlapped with the 84 samples used for gene expression analyses.
 
Contributor(s) Kuijjer ML, Rydbeck H, Kresse SH, Buddingh EP, Myklebost O, Bürger H, Hogendoorn PC, Meza-Zepeda LA, Cleton-Jansen A
Citation(s) 22454324
Submission date Oct 21, 2011
Last update date Nov 27, 2018
Contact name Marieke Lydia Kuijjer
Organization name Centre for Molecular Medicine Norway
Lab Kuijjer
Street address Gaustadalléen 21
City Oslo
ZIP/Postal code 0349
Country Norway
 
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (32)
GSM820994 High-grade osteosarcoma pre-chemotherapy biopsy L1085int
GSM820995 High-grade osteosarcoma pre-chemotherapy biopsy L1368int
GSM820996 High-grade osteosarcoma pre-chemotherapy biopsy L1370int
This SubSeries is part of SuperSeries:
GSE33383 Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data
Relations
BioProject PRJNA156639

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33153_RAW.tar 1003.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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