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| Status |
Public on Dec 20, 2012 |
| Title |
Poised RNA Polymerase II changes over developmental time and prepares genes for future expression (MNase-seq data) |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Poised RNA polymerase II is predominantly found at developmental control genes and is thought to allow their rapid and synchronous induction in response to extracellular signals. How the recruitment of poised RNA Pol II is regulated during development is not known. By isolating muscle tissue from Drosophila embryos at five stages of differentiation, we show that the recruitment of poised Pol II occurs at many genes de novo and this makes them permissive for future gene expression. When compared to other tissues, these changes are stage-specific and not tissue-specific. In contrast, Polycomb group repression is tissue-specific and in combination with Pol II (the balanced state) marks genes with highly dynamic expression. This suggests that poised Pol II is temporally regulated and is held in check in a tissue-specific fashion. We compare our data to mammalian embryonic stem cells and discuss a framework for predicting developmental programs based on chromatin state.
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| Overall design |
MNase-seq data for examining nucleosome occupancy in specific Drosophila tissues during development
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| |
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| Contributor(s) |
Gaertner B, Johnston J, Chen K, Zeitlinger J |
| Citation(s) |
23260668 |
| Submission date |
Dec 08, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Julia Zeitlinger |
| E-mail(s) |
jbz@stowers.org
|
| Organization name |
Stowers Institute for Medical Research
|
| Lab |
Zeitlinger Lab
|
| Street address |
1000 E 50th St
|
| City |
Kansas City |
| State/province |
MO |
| ZIP/Postal code |
64110 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL11203 |
Illumina Genome Analyzer IIx (Drosophila melanogaster) |
|
| Samples (2) |
| GSM846338 |
Toll10b mutant MNase-seq |
| GSM934836 |
muscle FAC sorted from dissociated embryos MNase-seq |
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| This SubSeries is part of SuperSeries: |
| GSE34304 |
Poised RNA Polymerase II changes over developmental time and prepares genes for future expression |
|
| Relations |
| SRA |
SRP009664 |
| BioProject |
PRJNA156519 |
