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Series GSE35965 Query DataSets for GSE35965
Status Public on Feb 22, 2012
Title A novel role of stem cell factor SALL4 as an oncofetal protein in hepatocellular carcinoma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Hepatocellular carcinoma (HCC) is the third leading cause of cancer-related deaths worldwide. Treatment of HCC remains abysmal; discovery of novel pathways implicated in hepatocarcinogenesis is needed for more effective therapeutics. SALL4 is a stem cell factor essential for the maintenance of embryonic stem cell self-renewal properties and expressed in fetal liver, but silenced in normal adult liver. We observed that expression of SALL4 in murine liver in a transgenic model led to development of HCC. In humans, SALL4 is re-expressed as an oncofetal protein in a subgroup of HCC patients with unfavorable prognoses. Loss-of-function studies demonstrated that SALL4 is essential for human HCC cell survival and tumorigenicity.
We demonstrated that a peptide can block the oncogenic function of SALL4 in HCC by modulating the PTEN/AKT pathway. Our findings reveal a novel role of SALL4 in HCC with important implications for understanding disease mechanisms and development of innovative therapeutics.
 
Overall design Cultured cells from HCC cell line SNU-398 with scrambled or SALL4 shRNA knockdown were used for RNA extraction and hybridization on Affymetrix microarrays.
 
Contributor(s) Yong KJ, Gao C, Yan B, Yang H, Lim J, Dimitrov T, Kawasaki A, Ong CW, Lee S, Ravikumar S, Srivastava S, Tian X, Luk JM, Dan YY, Salto-Tellez M, Chai L, Tenen DG
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Submission date Feb 21, 2012
Last update date Jul 26, 2018
Contact name Henry Yang
E-mail(s) csiyangh@nus.edu.sg
Organization name Cancer Science Institute of Singapore
Street address 28 Medical Drive
City Singapore
ZIP/Postal code 117456
Country Singapore
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (6)
GSM878160 scrambled biological rep1
GSM878161 scrambled biological rep2
GSM878162 scrambled biological rep3
Relations
BioProject PRJNA152063

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35965_RAW.tar 21.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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