|
| Status |
Public on Nov 30, 2012 |
| Title |
DNA Methylation in IMR90 cells |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
DNA methylation was measured by MBD2 enrichment of DNA fragments in IMR90. A statistical model was developed to estimate absolute methylation levels, and compared to whole genome bisulfite sequencing results (Lister, R. et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature)
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| |
|
| Overall design |
Two techincal replicates of MBD2 methylated DNA enrichment in IMR90 cells.
|
| |
|
| Contributor(s) |
Statham A |
| Citation(s) |
23245995 |
| Submission date |
Jun 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Aaron Statham |
| E-mail(s) |
a.statham@garvan.org.au
|
| Organization name |
Garvan Institute of Medical Research
|
| Department |
Cancer Department
|
| Lab |
Epigenetics Research Laboratory
|
| Street address |
384 Victoria St
|
| City |
Darlinghurst |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (1) |
|
| This SubSeries is part of SuperSeries: |
| GSE38685 |
Normal and Cancerous Prostate Cells |
|
| Relations |
| BioProject |
PRJNA168462 |
| SRA |
SRP013726 |
