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Series GSE39292 Query DataSets for GSE39292
Status Public on Jun 23, 2016
Title Oncogenic EGFR Represses the TET1 DNA Demethylase to Induce Silencing of Tumor Suppressors in Cancer Cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Oncogene-induced DNA methylation-mediated transcriptional silencing of tumor suppressors frequently occurs in cancer, but the mechanism and functional role of this silencing in oncogenesis is not fully understood. Here, we show that oncogenic epidermal growth factor receptor (EGFR) induces silencing of multiple unrelated tumor suppressors in lung adenocarcinomas and glioblastomas by inhibiting DNA demethylase TET oncogene family member 1 (TET1) via the C/EBPα transcription factor. After oncogenic EGFR inhibition, TET1 binds to tumor suppressor promoters and induces their re-expression via active DNA demethylation. Ectopic expression of TET1 potently inhibits lung and glioblastoma tumor growth, and TET1 knockdown confers resistance to EGFR inhibitors in lung cancer cells. Lung cancer samples exhibited reduced TET1 expression or TET1 cytoplasmic localization in a majority of cases. Collectively, these results identify a conserved pathway of oncogenic EGFR-induced DNA methylation-mediated transcriptional silencing of tumor suppressors, which may have therapeutic benefit for oncogenic EGFR-mediated lung cancers and glioblastomas.

 
Overall design HCC827-Del (EGFR L747-S752) and HCC827-Del-TM (EGFR L747-S752/T790M) cell lines were treated with Decitibine (2.5 μM) and Vorinostat (1μM) or as a control cells that were treated with DMSO for 72 hrs. Expression profiling was performed using 3 biological replicates for each condition for a total of 12 samples analyzed.
 
Contributor(s) Forloni M, Gupta R, Dogra S, Nagarajan A, Wajapeyee N
Citation(s) 27346347
Submission date Jul 12, 2012
Last update date Aug 13, 2018
Contact name Narendra Wajapeyee
E-mail(s) nwajapey@uab.edu
Phone 205-934-5331
Organization name University of Alabama at Birmingham
Department Department of Biochemistry and Molecular Genetics
Street address 720 20th Street South, Kaul 540A
City Birmingham
State/province AL
ZIP/Postal code 35233
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (12)
GSM960263 HCC827-Del replicate 1
GSM960264 HCC827-Del replicate 2
GSM960265 HCC827-Del replicate 3
Relations
BioProject PRJNA170509

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39292_RAW.tar 26.2 Mb (http)(custom) TAR
GSE39292_matrix_non-normalized_data.txt.gz 3.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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