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Series GSE39681 Query DataSets for GSE39681
Status Public on Oct 31, 2012
Title Transcriptional imprinting of transmigrating neutrophils on T84 intestinal epithelial cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Neutrophil accumulation in crypt abscesses is a pathological hallmark of ulcerative colitis. Based on recent evidence that mucosal metabolic changes influence disease outcomes, we hypothesized that transmigrating neutrophils influence the transcriptional profile of intestinal epithelia. Microarray studies revealed a cohort of hypoxia-responsive genes regulated by neutrophil-epithelial crosstalk. Real-time O2 sensing indicated that transmigrating neutrophils rapidly deplete microenvironmental O2 sufficient enough to stabilize intestinal epithelial cell hypoxia-inducible factor (HIF). Utilizing HIF reporter mice in a TNBS colitis model, we investigated the relative contribution of neutrophils and the respiratory burst to “inflammatory hypoxia” in vivo. Gp91phox-null mice, which mirror human chronic granulomatous disease, developed accentuated colitis compared to control with exaggerated neutrophil infiltration and diminished inflammatory hypoxia. In conclusion, transcriptional imprinting of host tissue by infiltrating neutrophils modulates the host response to inflammation. Likewise, the respiratory burst contributes fundamentally to localized O2 depletion, resultant microenvironmental hypoxia and effective inflammatory resolution.
 
Overall design Two models were employed, direct and indirect. The “Direct” migration model entailed establishing a chemotactic gradient (using fMLP) across monolayers of T84 intestinal epithelial cells grown on the underside of permeable supports (3um pore). Neutrophils (PMN) were induced to migrate in the physiologically relevant the physiologically relevant basolateral-to-apical direction. Following migration, T84s were rested in complete media and 2hrs later harvested for RNA isolation. In the Indirect model, PMN were applied to T84s as with the direct model. After migration, conditioned supernatants were collected, cells pelleted and supernatants filtered through 0.2um pore. Conditioned supernatants were transferred to naive T84 monolayers for 2hrs, followed by RNA harvest. Each model was exposed to neutrophils (PMN) or not. All monolayers contained chemotactic peptide fMLP on the apical side. Total of 12 samples, 4 conditions in triplicate: Direct migration without neutrophils (T84 +fMLP -PMN), Direct migration with neutrophils (T84 +fMLP +PMN), Indirect migration without neutrophils (T84 +fMLP -PMN), Indirect migration with neutrophils (T84 +fMLP +PMN)
 
Contributor(s) Campbell EL, Bruyninckx WJ, Kelly C, Glover LE, McNamee EN, Bayless AJ, Bowers BE, Ehrentraut SF, Burgess A, Golden-Mason L, Garvey J, Sorensen A, Nemenoff R, Jedlicka P, Taylor CT, Kominsky DJ, Colgan SP
Citation(s) 24412613
Submission date Jul 26, 2012
Last update date Jan 23, 2019
Contact name Eric L Campbell
E-mail(s) eric.campbell@ucdenver.edu
Organization name University of Colorado - Anschutz Medical Campus
Street address 12700 East 19th Ave
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (12)
GSM977598 Direct -PMN 1
GSM977599 Direct -PMN 2
GSM977600 Direct -PMN 3
Relations
BioProject PRJNA171393

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39681_RAW.tar 106.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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