|
| Status |
Public on Sep 21, 2012 |
| Title |
Tag-seq profiling in eye-antennal and wing imaginal discs of D. melanogaster, D. yakuba and D. virilis |
| Organisms |
Drosophila melanogaster; Drosophila virilis; Drosophila yakuba |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The aim of this study is to identify a set of eye-specific genes across Drosophila species. Species are used as replicates to remove biological noise and identify a core set of conserved eye-developmental genes. We analyze this conserved core using the motif discovery tool i-cisTarget, and identify master regulators of retinal determination, including the Zinc Finger transcription factor Glass.
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| |
|
| Overall design |
Six samples were analyzed by Illumina Digital Gene Expression (DGE) using the NlaIII restriction enzyme, namely two different tissues (eye-antennal discs and wing discs) for each of the three species under study.
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| Contributor(s) |
Aerts S |
| Citation(s) |
23070853 |
| Submission date |
Jul 31, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Stein Aerts |
| Organization name |
KULeuven
|
| Department |
Center for Human Genetics
|
| Lab |
Laboratory of Computational Biology
|
| Street address |
Herestraat 49
|
| City |
Leuven |
| ZIP/Postal code |
3000 |
| Country |
Belgium |
| |
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| Platforms (3) |
| GPL11203 |
Illumina Genome Analyzer IIx (Drosophila melanogaster) |
| GPL15872 |
Illumina Genome Analyzer IIx (Drosophila yakuba) |
| GPL15873 |
Illumina Genome Analyzer IIx (Drosophila virilis) |
|
| Samples (6)
|
| GSM978991 |
Tag_seq_eye-antennal_imaginal_disc_D.melanogaster |
| GSM978992 |
Tag_seq_wing_imaginal_disc_D.melanogaster |
| GSM978993 |
Tag_seq_eye-antennal_imaginal_disc_D.yakuba |
| GSM978994 |
Tag_seq_wing_imaginal_disc_D.yakuba |
| GSM978995 |
Tag_seq_eye-antennal_imaginal_disc_D.virilis |
| GSM978996 |
Tag_seq_wing_imaginal_disc_D.virilis |
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| This SubSeries is part of SuperSeries: |
| GSE39784 |
Tag-seq in eye-antennal and wing imaginal discs of D.melanogaster, D.yakuba, and D.virilis; RNA-seq in wild-type and glass mutant D.melanogaster eye-antennal imaginal discs. |
|
| Relations |
| SRA |
SRP014637 |
| BioProject |
PRJNA171886 |
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