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Series GSE40828 Query DataSets for GSE40828
Status Public on Jul 01, 2013
Title Human lung epithelial cells progressed to malignancy through specific oncogenic manipulations
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We have developed cdk4/hTERT-immortalized normal human bronchial epithelial cells (HBECs) to study lung cancer pathogenesis. By studying the oncogenic effect of common lung cancer alterations (p53, KRAS, and c-MYC) we demonstrate the ability of this model to characterize the stepwise transformation of bronchial epithelial cells to full malignancy. Using HBECs derived from multiple individuals we found: 1) the combination of five genetic alterations (p53, KRASV12, c-MYC, CDK4 and hTERT) is sufficient for full tumorigenic conversion of HBECs; 2) high levels of KRASV12 are required for full malignant transformation of HBECs, however these levels also stimulate oncogene-induced senescence; 3) RAS-induced senescence is largely bypassed with loss of p53 function; 4) over-expression of c-MYC greatly enhances malignancy but only in the context of sh-p53+KRASV12; 5) HBECs from different individuals vary in their sensitivity to transformation by these oncogenic manipulations; 6) serum-induced epithelial-to-mesenchymal transition (EMT) increases in vivo tumorigenicity; 7) genetically-identical clones of transformed HBECs exhibit pronounced differences in tumor growth, histology, and differentiation as well as sensitivity to standard platinum-based chemotherapies; and 8) an mRNA signature derived from tumorigenic and non-tumorigenic clones is predictive of outcome in lung cancer patients. Collectively, we demonstrate this HBEC model system can be used to study the effect of oncogenic mutations on malignant progression, oncogene-induced senescence, and EMT along with clinically translatable applications such as development of prognostic signatures and drug response phenotypes.
 
Overall design Human bronchial epithelial cells (HBECs) immortalized with cdk4 and hTERT were transformed with p53 knockdown, KrasV12 and cMYC over-expression and profiled on Illumina HumanHT-12 V4.0 expression beadchips. Transformed HBECs were grown in two different growth media: KSFM (defined, serum-free medium) or R10 (RPMI with 10% FBS) as indicated. Clones were isolated from HBECs with sh-p53 + KrasV12 and sh-p53 + KrasV12 + cMYC.
 
Contributor(s) Larsen JE, Girard L, Minna JD
Citation(s) 23449933, 28377453
Submission date Sep 12, 2012
Last update date Oct 24, 2019
Contact name Luc Girard
E-mail(s) Luc.Girard@UTSouthwestern.edu
Organization name UT Southwestern Medical Center
Department Hamon Center for Therapeutic Oncology Research
Lab NB8.114A
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390-8593
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (15)
GSM1002622 HBEC3_p53_KRAS_KSFM
GSM1002623 HBEC3_p53_KRAS_R10
GSM1002624 HBEC3_p53_KRAS_R10_c1
Relations
BioProject PRJNA175054

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40828_RAW.tar 26.2 Mb (http)(custom) TAR
GSE40828_matrix_non-normalized_data.txt.gz 2.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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