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| Status |
Public on Sep 25, 2014 |
| Title |
mRNA profiles of WTAP siRNA-treated HUVECs |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To examine the role of WTAP in splicing regulation, we performed high-throughput mRNA sequencing (RNA-seq) on RNA isolated from control, WTAP or Virilizer siRNA-treated HUVECs, yielding 12 million uniquely mapped 75nt pair-end tags from each sample.
MapSplice software was used for differential expression and differences in transcript splice junctions .
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| Overall design |
mRNA profiles of control, WTAP or Virilizer siRNA-treated HUVECs were generated by deep sequencing using Illumina GAII.
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| Contributor(s) |
Horiuchi K, Hamakubo T |
| Citation missing |
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| Submission date |
Sep 27, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Horiuchi Keiko |
| E-mail(s) |
keiko-horiuchi@nms.ac.jp
|
| Phone |
81-44-733-1827
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| Organization name |
Institute for Advanced Medical Sciences, Nippon Medical School
|
| Department |
Protein-Protein Interaction
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| Street address |
1-396 Kosugi-cho, Nakahara-ku,
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| City |
Kawasaki |
| State/province |
Kanagawa |
| ZIP/Postal code |
211-8533 |
| Country |
Japan |
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| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA176097 |
| SRA |
SRP015909 |
