|
| Status |
Public on Apr 29, 2013 |
| Title |
A Master Cistromic Circuit Governing Hepatic Fibrogenesis |
| Organisms |
Homo sapiens; Rattus norvegicus |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
23622244 |
| Submission date |
Oct 15, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Ruth T Yu |
| Organization name |
Salk Institute
|
| Department |
Gene Expression Lab
|
| Lab |
Ronald Evans
|
| Street address |
10010 N Torrey Pines Rd
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL6101 |
Illumina ratRef-12 v1.0 expression beadchip |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
|
| Samples (14)
|
| GSM934615 |
SMAD3-ChIP + calcipotriol + TGFb |
| GSM934616 |
SMAD3-ChIP + TGFb |
| GSM934617 |
VDR-ChIP + calcipotriol +TGFb |
| GSM934618 |
VDR-ChIP + TGFb |
| GSM934619 |
H3-ChIP + calcipotriol +TGFb |
| GSM934620 |
H3-ChIP + calcipotriol |
| GSM1019668 |
freshly isolated HSCs |
| GSM1019669 |
primary HSCs, day 3, vehicle rep1 |
| GSM1019670 |
primary HSCs, day 3, vehicle rep2 |
| GSM1019671 |
primary HSCs, day 3, 1,25(OF)2-D3 treated rep1 |
| GSM1019672 |
primary HSCs, day 3, 1,25(OF)2-D3 treated rep2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE38103 |
A master cistromic circuit governing hepatic fibrogenesis [ChIP-seq] |
| GSE41579 |
A master cistromic circuit governing hepatic fibrogenesis [expression array] |
|
| Relations |
| BioProject |
PRJNA177566 |
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