|
| Status |
Public on Jul 03, 2013 |
| Title |
Epigenomic alterations in localized and advanced prostate cancer |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Here we used Illumina NGS for high-throughput profiling of the DNA methylome in seven human benign prostate tissues, seven human primary prostate cancer and six human castration resistant prostate cancer patient samples. These data were used to profile the CpG cytosine methylation pattern at single base resolution in each sample and to determine differentially methylated cytosines and regions among samples.
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| |
|
| Overall design |
Enhanced Reduced Representation Bisulfite Sequencing (ERRBS, MspI,150–400 bp size fractions) of 20 human prostate tissues (benign prostate tissues, localized and metastatic prostate cancer)
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| |
|
| Contributor(s) |
Lin PC, Rubin MA, Elemento O |
| Citation(s) |
23555183 |
| Submission date |
Oct 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Pei-Chun Lin |
| E-mail(s) |
pel2008@med.cornell.edu
|
| Phone |
(212)746-6306
|
| Fax |
(212)746-8816
|
| Organization name |
Cornell Weill Medical College
|
| Department |
Pathology and Laboratory Medicine
|
| Lab |
Dr. Mark A. Rubin
|
| Street address |
1300 York Ave
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (20)
|
|
| Relations |
| BioProject |
PRJNA177992 |
| SRA |
SRP016558 |
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