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GEO accession:
Series GSE42309
Query DataSets for GSE42309
Status
Public on Sep 07, 2014
Title
H2A.X function in mouse ESC and iPSC (ChIPSeq and CNVs)
Organism
Mus musculus
Experiment type
Genome variation profiling by genome tiling array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25192463
Submission date
Nov 15, 2012
Last update date
May 15, 2019
Contact name
Andrew Zhuo Xiao
E-mail(s)
andrew.xiao@yale.edu
Phone
203-785-5111
Organization name
Yale Stem Cell Center
Department
Genetics
Lab
Andrew Xiao
Street address
10 Amistad St
City
New Haven
State/province
CT
ZIP/Postal code
06519
Country
USA
Platforms (3)
GPL11002
Illumina Genome Analyzer IIx (Mus musculus)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL15225
NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH]
Samples (44)
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GSM1036454
H2AX_iPSC_4N_positive_PF1
GSM1036455
H2AX_iPSC_4N_positive_TTF1
GSM1036456
H2AX_iPSC_4N_negative_PF2
GSM1036457
H2AX_iPSC_4N_negative_TTF2
GSM1036458
H2AX_iPSC_4N_negative_TTF3
GSM1036459
H2AX_iPSC_4N_negative_Bcell2
GSM1036460
H2AX_iPSC_4N_negative_Bcell3
GSM1036461
H2AX_iPSC_4N_negative_Bcell4
GSM1036462
H2AX_KO_ESC
GSM1037471
H2AX_iPSC_4N_positive_PF1
GSM1037472
H2AX_iPSC_4N_positive_TTF1
GSM1037473
H2AX_iPSC_4N_positive_Bcell1
GSM1037474
H2AX_iPSC_4N_negative_PF2
GSM1037475
H2AX_iPSC_4N_negative_TTF2
GSM1037476
H2AX_iPSC_4N_negative_Bcell2
GSM1037477
H2AX_iPSC_4N_negative_Bcell3
GSM1037478
H2AX_iPSC_4N_negative_Bcell4
GSM1037479
H2AX_iPSC_4N_negative_Bcell5
GSM1037480
H2AX_ESC1_wt_control_129andC57
GSM1037481
H2AX_ESC2_wt_ES_C57
GSM1037482
H2AX_ESC3_wt_ES_129andC57
GSM1037483
H2AX_WT_MEFs_1
GSM1037484
H2AX_WT_MEFs_2
GSM1037485
H2AX_WT_Flag_MEFs_rep1
GSM1037486
H2AX_WT_Flag_MEFs_rep2
GSM1037487
H2AX_WT_Flag_MEFs_rep3
GSM1037488
IgG_control
GSM1037489
Input_DNA_iPSC_4N_positive_PF1
GSM1037490
Input_DNA_iPSC_4N_positive_TTF1
GSM1037491
Input_DNA_iPSC_4N_positive_Bcell1
GSM1037492
Input_DNA_iPSC_4N_negative_PF2
GSM1037493
Input_DNA_iPSC_4N_negative_TTF2
GSM1037494
Input_DNA_iPSC_4N_negative_Bcell2
GSM1037495
Input_DNA_iPSC_4N_negative_Bcell4
GSM1037496
Input_DNA_iPSC_4N_negative_Bcell5
GSM1037497
Input_DNA_ESC1_wt_control_129andC57
GSM1037498
Input_DNA_ESC2_wt_ES_C57
GSM1037499
Input_DNA_ESC3_wt_ES_129andC57
GSM1037500
Input_DNA_WT_MEFs_1
GSM1037501
Input_DNA_WT_MEFs_2
GSM1037502
Input_DNA_WT_Flag_MEFs_rep1
GSM1037503
Input_DNA_WT_Flag_MEFs_rep2
GSM1377383
H2AX_TSC_wt_GFP_TS3.5
GSM1377384
Input_DNA_control_TS3.5
This SuperSeries is composed of the following SubSeries:
GSE42266
CNV analysis of iPS cell lines and H2A.X knockout ES cell
GSE42306
H2A.X native ChIP-Seq in ESC and iPSC: Histone Variant H2A.X Mediated Epigenetic Mechanisms are Critical for Maintaining Genome Stability and Pluripotency in ES and iPS Cells
GSE57216
H2A.X native ChIP-Seq in TSC; Histone Variant H2A.X Mediated Epigenetic Mechanisms are Critical for Pluripotency in ES and iPS Cells
Relations
BioProject
PRJNA181005
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE42309_RAW.tar
6.6 Gb
(http)
(custom)
TAR (of BED, BEDGRAPH, PAIR, TXT)
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