|
| Status |
Public on Oct 01, 2013 |
| Title |
Genome-wide total RNA and MBD-sequencing in HCT116 and DKO cells as a global re-expression model [RNA-Seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Genome-wide view of the interplay between methylation and RNA expression in this colorectal cancer model was obtained.
|
| |
|
| Overall design |
RNA-sequencing of HCT116 cell line, the DNMT1 and DNMT3B double knock-out HCT116 cell line (DKO), and 7 additional colorectal cell lines.
|
| |
|
| Contributor(s) |
De Schrijver J, Trooskens G, Bosch LW, Dehan P, Carvalho B, Van Neste L, Meijer GA, Baylin S, Van Criekinge W |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 20, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Joachim De Schrijver |
| Organization name |
Universiteit Gent
|
| Lab |
Biobix
|
| Street address |
Coupure Links 653
|
| City |
Gent |
| ZIP/Postal code |
9000 |
| Country |
Belgium |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (17)
|
|
| This SubSeries is part of SuperSeries: |
| GSE45334 |
Genome-wide total RNA and MBD-sequencing in HCT116 and DKO cells as a global re-expression model |
|
| Relations |
| BioProject |
PRJNA193485 |
| SRA |
SRP019810 |
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