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| Status |
Public on May 01, 2013 |
| Title |
Comparing proteomics and RISC immunoprecipitations to identify targets of Epstein-Barr viral miRNAs [RISC-IP-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Epstein-Barr virus is a gamma-herpes virus that is causally associated with several lymphomas and carcinomas. This virus encodes at least 25 pre-miRNAs, which are expressed in infected cells to yield more than 50 detected mature miRNAs. miRNAs are small, non-coding RNAs that inhibit gene expression by promoting the inhibition of translation or of degradation of mRNAs. Currently, the function of these viral miRNAs and the contribution they provide to EBV's life-cycle remain largely unknown, due to difficulties in identifying cellular and viral genes regulated by these miRNAs. We have compared and contrasted two methods to identify targets of viral miRNAs in order to identify the advantages and limitations of each method to aid in uncovering the functions of EBV's miRNAs.
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| |
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| Overall design |
Examination of RISC (RNA Induced Silencing Complexes) associated transcripts under 2 conditions in BJAB cells
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| Contributor(s) |
Kuzembayeva M, Chiu Y, Sugden B |
| Citation(s) |
23091622 |
| Submission date |
Apr 30, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Bill Sugden |
| E-mail(s) |
sugden@oncology.wisc.edu
|
| Organization name |
University of Wisconsin-Madison
|
| Street address |
1111 Highland Ave
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53705 |
| Country |
USA |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA200712 |
| SRA |
SRP021916 |
