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Series GSE46681 Query DataSets for GSE46681
Status Public on Nov 24, 2014
Title Profiling the successful response to infection with West Nile virus
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Individual variations in immune status and function determine responses to infection and contribute to disease severity and outcome. Patients exhibit considerable variation in clinical responses to infection with West Nile virus. We have undertaken a comprehensive characterization of the immune responses of a stratified cohort of patients with a history of West Nile virus infection to identify key mechanisms of resistance and susceptibility. We provide molecular profiles of cellular mechanisms of primary human immune cells defined through multifaceted interrogation including multiplexed gene expression analysis integrated with highly sensitive multidimensional flow cytometry. The availability of reliably curated patient cohorts and data-sharing and data mining techniques of high-throughout investigations should accelerate identification of critical elements of immune resistance to important pathogens
 
Overall design Differential gene expression by human PBMCs and macrophages from asymptomatic and severe patients with WNV infection or Poly I:C were generated by microarray.
 
Contributor(s) Montgomery R, Qian F, Meng H, Kleinstein S
Citation(s) 25355795
Submission date May 06, 2013
Last update date Aug 13, 2018
Contact name Hailong Meng
Organization name Yale University
Street address 300 George Str
City New Haven
State/province CT
ZIP/Postal code 06525
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (195)
GSM1058055 PBMC_Asymptomatic 1
GSM1058056 PBMC_Asymptomatic 2
GSM1058057 PBMC_Asymptomatic 3
Relations
BioProject PRJNA218798

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46681_RAW.tar 26.2 Mb (http)(custom) TAR
GSE46681_non_normalized.txt.gz 53.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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