|
| Status |
Public on Sep 01, 2013 |
| Title |
mRNA expression profiles of 71 esophageal squamous cell carcinoma cases |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Analysis of primary esophageal squamous cell carcinoma (ESCC) from 71 patients in japan. Integrative analysis of gene expression profiles and genomic alterations obtained from array-CGH and NGS provided us new insight into the pathogenesis of ESCC
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| |
|
| Overall design |
Gene expression levels obtained from 71 microdissected ESCC tumors. We used the commercially available Human Whole Genome Oligo DNA Microarray Kit (Agilent Technologies). Labeled cRNAs were fragmented and hybridized to an oligonucleotide microarray (Whole Human Genome 4×44K Agilent G4112F). Fluorescence intensities were determined with an Agilent DNA Microarray Scanner. The gene expression profiles (GE) obtained from microarray data were quintile normalized. The batch effect in microarray experiments was also adjusted by an empirical Bayesian approach
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| |
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| Contributor(s) |
Mimori K, Mori M |
| Citation(s) |
26465158 |
| |
| Submission date |
May 28, 2013 |
| Last update date |
Jan 23, 2019 |
| Contact name |
sawada genta |
| E-mail(s) |
gsawada@beppu.kyushu-u.ac.jp
|
| Organization name |
kyushu university
|
| Street address |
tsurumihara
|
| City |
beppu |
| ZIP/Postal code |
Oita |
| Country |
Japan |
| |
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| Platforms (1) |
| GPL6480 |
Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version) |
|
| Samples (71)
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| Relations |
| BioProject |
PRJNA205493 |
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