NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE47423 Query DataSets for GSE47423
Status Public on May 29, 2013
Title ERG is a critical regulator of Wnt/LEF1 signaling in prostate cancer
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Chromosomal translocations juxtaposing the androgen-responsive TMPRSS2 promoter with the ETS-family transcription factor ERG result in aberrant ERG up-regulation in approximately 50% of prostate cancers. Studies to date have demonstrated important roles of ERG in inducing oncogenic properties of prostate cancer. Its molecular mechanisms of action, however, are yet to be fully understood. To address these questions, we generated engineered LNCaP cells with ERG overexpression followed by LEF1 knockdown as well as control cell lines. To further investigate the role of LEF1 in ERG fusion positive samples, we also knockdown ERG in VCaP cell line.
 
Overall design We performed microarray analysis on LNCaP cells with ERG overexpression followed by LEF1 knockdown using siRNA. We also knockdown endogenous ERG in fusion-positive cell line VCaP.
 
Contributor(s) WU L, YU J
Citation(s) 23913826
Submission date May 28, 2013
Last update date Aug 13, 2018
Contact name Longtao WU
E-mail(s) long-tao-wu@northwestern.edu
Phone 312-503-3441
Fax 312-503-0189
Organization name Northwestern University
Department Hematology/Oncology
Lab Jindan Yu Lab
Street address 303 E Superior St.
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (5)
GSM1149239 VCaP siCtrl
GSM1149240 VCaP siERG
GSM1149241 LNCaP LacZ
Relations
BioProject PRJNA205538

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47423_GeneLevel-NotNormalized-BGSubtracted.txt.gz 2.1 Mb (ftp)(http) TXT
GSE47423_GeneLevel-QuantileNormalized-BGSubtracted.txt.gz 2.1 Mb (ftp)(http) TXT
GSE47423_ProbeLevel-NotNormalized-BGSubtracted.txt.gz 5.4 Mb (ftp)(http) TXT
GSE47423_ProbeLevel-QuantileNormalized-BGSubtracted.txt.gz 5.4 Mb (ftp)(http) TXT
GSE47423_RAW.tar 26.2 Mb (http)(custom) TAR
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap