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| Status |
Public on Dec 30, 2014 |
| Title |
SMARCAD1 Regulates Nucleosome Positioning and Maintenance of the Naïve Pluripotent State |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Genome-wide maps of nucleosome positioning in mouse ES cells with control shRNA and on Smarcad1 KD. MNase-seq data for human colo829 cells are also included.
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| Overall design |
We used the strategies of Mnase-Seq to detect the nucleusome positions features in E14 and Smarcad1-knock down cells. With global comparison, we described the fuction of Smarcad1 in switch pluripotent states.
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| Contributor(s) |
Xiao S, Yu P, Chen C, Sridhar B, McDee D, Li Y, Li D, Sloofman L, Zhu X, Telugu BP, Wang F, Levasseur D, Zhao S, Tanaka T, Zhong S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jun 10, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Pengfei Yu |
| E-mail(s) |
yupf05@gmail.com
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| Organization name |
University of California San Diego
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| Department |
Bioengineering
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| Lab |
Dr. Sheng Zhong
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| Street address |
9500 Gilman Drive MC 0419
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093-0419 |
| Country |
USA |
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| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA208009 |
| SRA |
SRP025981 |
