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Series GSE48023 Query DataSets for GSE48023
Status Public on Jun 18, 2013
Title Time series of global gene expression after trivalent influenza vaccination in humans (female cohort)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The purpose of the study was to assess the patterns of global gene expression in peripheral blood cells before and at three time points after the administration of a trivalent influenza vaccine in human female subjects, and to relate these to the antibody response to the vaccine
 
Overall design 128 healthy female human volunteers ages 19 - 41 years were recruited in the study. Whole-blood RNA samples were collected in PaxGene tubes before and at three time points after administration of a trivalent influenza vaccine. Baseline samples (before vaccination) are labeled as day 0. The three additional time points are days 1, 3, and 14 after vaccination. A total of 417 arrays, corresponding to 110 individuals, passed quality control, corresponded to individuals where at least two of the four arrays in the series were available, and corresponded to individuals who were ethnically homogeneous as determined by identity-by-state and multidimensional scaling analysis of their genotype data. That set of 417 arrays was used for analysis in the associated publication and was therefore included in this GEO upload. These are distributed as follows: Day 0: 107 Samples Day 1: 107 Samples Day 3: 105 Samples Day 14: 98 Samples
 
Contributor(s) Franco LM, Shaw CA, Belmont JW, Couch RB
Citation(s) 23878721, 21357945
Submission date Jun 17, 2013
Last update date Aug 13, 2018
Contact name Luis M Franco
Organization name National Institutes of Health
Department National Institute of Allergy and Infectious Diseases
Lab Laboratory of Immune System Biology
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (417)
GSM1165512 WholeBloodRNA_IN0242_Day0
GSM1165513 WholeBloodRNA_IN0242_Day1
GSM1165514 WholeBloodRNA_IN0242_Day14
This SubSeries is part of SuperSeries:
GSE48024 Time series of global gene expression after trivalent influenza vaccination in humans
Relations
BioProject PRJNA208721

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48023_Age_in_years_at_enrollment.txt.gz 504 b (ftp)(http) TXT
GSE48023_FluB_HAI_titers.txt.gz 544 b (ftp)(http) TXT
GSE48023_FluB_neutralizing_titers.txt.gz 633 b (ftp)(http) TXT
GSE48023_H1N1_HAI_titers.txt.gz 571 b (ftp)(http) TXT
GSE48023_H1N1_neutralizing_titers.txt.gz 661 b (ftp)(http) TXT
GSE48023_H3N2_HAI_titers.txt.gz 592 b (ftp)(http) TXT
GSE48023_H3N2_neutralizing_titers.txt.gz 668 b (ftp)(http) TXT
GSE48023_RAW.tar 26.2 Mb (http)(custom) TAR
GSE48023_non-normalized.txt.gz 117.5 Mb (ftp)(http) TXT
GSE48023_titer_data_info.txt.gz 442 b (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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