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GEO help: Mouse over screen elements for information. |
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Status |
Public on Aug 20, 2013 |
Title |
Transcriptional profiling of a breast cancer cell line panel using RNAseq technology |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
56 breast cancer cell lines were profiled to identify patterns of gene expression associated with subtype and response to therapeutic compounds.
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Overall design |
Cell lines were profiled in their baseline, unperturbed state.
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Contributor(s) |
Gray JW, Heiser LM |
Citation(s) |
24176112 |
Submission date |
Jun 21, 2013 |
Last update date |
May 15, 2019 |
Contact name |
Laura M. Heiser |
E-mail(s) |
heiserl@ohsu.edu
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Organization name |
OHSU
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Street address |
3181 SW Sam Jackson Park Rd.
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City |
Portland |
State/province |
OR |
ZIP/Postal code |
97239 |
Country |
USA |
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Platforms (1) |
GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
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Samples (56)
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GSM1172847 |
21MT2, RNA-Seq |
GSM1172848 |
21NT, RNA-Seq |
GSM1172849 |
21PT, RNA-Seq |
GSM1172850 |
600MPE, RNA-Seq |
GSM1172851 |
AU565, RNA-Seq |
GSM1172853 |
BT474, RNA-Seq |
GSM1172854 |
BT483, RNA-Seq |
GSM1172855 |
BT549, RNA-Seq |
GSM1172856 |
CAMA1, RNA-Seq |
GSM1172858 |
EFM192A, RNA-Seq |
GSM1172859 |
EFM192B, RNA-Seq |
GSM1172860 |
EFM192C, RNA-Seq |
GSM1172861 |
HCC1143, RNA-Seq |
GSM1172863 |
HCC1395, RNA-Seq |
GSM1172864 |
HCC1419, RNA-Seq |
GSM1172865 |
HCC1428, RNA-Seq |
GSM1172867 |
HCC1569, RNA-Seq |
GSM1172868 |
HCC1599, RNA-Seq |
GSM1172869 |
HCC1806, RNA-Seq |
GSM1172870 |
HCC1937, RNA-Seq |
GSM1172871 |
HCC1954, RNA-Seq |
GSM1172872 |
HCC202, RNA-Seq |
GSM1172873 |
HCC2218, RNA-Seq |
GSM1172874 |
HCC3153, RNA-Seq |
GSM1172875 |
HCC38, RNA-Seq |
GSM1172876 |
HCC70, RNA-Seq |
GSM1172877 |
HS578T, RNA-Seq |
GSM1172878 |
JIMT1, RNA-Seq |
GSM1172879 |
LY2, RNA-Seq |
GSM1172881 |
MB157, RNA-Seq |
GSM1172882 |
MCF10A, RNA-Seq |
GSM1172883 |
MCF10F, RNA-Seq |
GSM1172884 |
MCF12A, RNA-Seq |
GSM1172885 |
MCF7, RNA-Seq |
GSM1172886 |
MDAMB134VI, RNA-Seq |
GSM1172888 |
MDAMB175, RNA-Seq |
GSM1172889 |
MDAMB231, RNA-Seq |
GSM1172890 |
MDAMB361, RNA-Seq |
GSM1172893 |
MX1, RNA-Seq |
GSM1172895 |
SKBR3, RNA-Seq |
GSM1172896 |
SUM1315, RNA-Seq |
GSM1172897 |
SUM149PT, RNA-Seq |
GSM1172901 |
SUM225CWN, RNA-Seq |
GSM1172902 |
SUM229PE, RNA-Seq |
GSM1172903 |
SUM52PE, RNA-Seq |
GSM1172904 |
T47D, RNA-Seq |
GSM1172905 |
T47D Kbluc, RNA-Seq |
GSM1172906 |
UACC812, RNA-Seq |
GSM1172907 |
UACC893, RNA-Seq |
GSM1172908 |
ZR751, RNA-Seq |
GSM1172909 |
ZR7530, RNA-Seq |
GSM1172910 |
ZR75B, RNA-Seq |
GSM1384316 |
MDAMB453, RNA-Seq |
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This SubSeries is part of SuperSeries: |
GSE48216 |
Modeling precision treatment of breast cancer |
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Relations |
BioProject |
PRJNA210428 |
SRA |
SRP026537 |
Supplementary file |
Size |
Download |
File type/resource |
GSE48213_RAW.tar |
13.4 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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