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| Status |
Public on Jul 08, 2014 |
| Title |
Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma (PDAC) |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
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| Summary |
Determine methylation pattern in PDAC a genome-wide analysis was performed in a cohort of 167 PDAC and 29 adjacent pancreatic tissues samples using the Infinium 450k methylation arrays (Illumina).
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| Overall design |
167 pancreatic tumors (PDAC) x 29 adjacent -non tumor samples.
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| Contributor(s) |
Nones K, Waddell N, Song S, Patch A, Kassahn K, Johns A, Wu J, Wood D, Bailey P, Miller D, Manning S, Christ A, Nourse C, Thomas M, Watson C, Pinese M, Cowley M, Scarpa A, Lawlor RT, Pearson JV, Biankin AV, Grimmond SM |
| Citation(s) |
24500968, 26909576 |
| Submission date |
Jul 23, 2013 |
| Last update date |
Mar 22, 2019 |
| Contact name |
Katia Nones |
| E-mail(s) |
katia.nones@qimrberghofer.edu.au
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| Phone |
+61 7 3845 3983
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| Organization name |
QIMR Berghofer MEdical Research Institute
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| Street address |
300 Herston Road
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| City |
Brisbane |
| State/province |
QLD |
| ZIP/Postal code |
4029 |
| Country |
Australia |
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| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
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| Samples (196)
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| Relations |
| BioProject |
PRJNA213312 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE49149_GSM1194354_to_GSM1194532_Beta_value_detection_pevalue_Methylation.txt.gz |
365.7 Mb |
(ftp)(http) |
TXT |
| GSE49149_GSM1194354_to_GSM1194532_Signal_A_B_detection_pevalue_Methylation.txt.gz |
400.8 Mb |
(ftp)(http) |
TXT |
| GSE49149_GSM1435224_to_GSM1435245_Signal_A_B_raw.txt.gz |
23.9 Mb |
(ftp)(http) |
TXT |
| GSE49149_RAW.tar |
1.7 Gb |
(http)(custom) |
TAR (of IDAT) |
| Processed data included within Sample table |
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