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Series GSE49301 Query DataSets for GSE49301
Status Public on Jul 29, 2013
Title Human hepatic stellate cell line LX-2 activated under acidic culture condition
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We found that the number of tumor-infiltrating myofibroblasts was positively correlated to tumor acidification status in hepatocellular carcinoma (HCC). Hepatic stellate cells (HSCs), the predominant precursors of liver myofibroblasts, were activated and transdifferentiated into myofibroblasts under acidic culture condition.
To identify the molecular phenotype of LX-2 cells in acidic culture conditions, we further conducted a gene expression profile analysis.
 
Overall design LX-2 cells cultured in pH 7.2 or pH 6.2 medium separately for six days was used in gene expression microarray analysis.
 
Contributor(s) Song J, Qin W
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Submission date Jul 29, 2013
Last update date Oct 11, 2016
Contact name Wenxin Qin
E-mail(s) wxqin@sjtu.edu.cn
Phone +86-21-64436581
Organization name Shanghai Cancer Institute, Renji Hospital, Shanghai Jiao Tong University School of Medicine
Lab State Key Laboratory of Oncogenes and Related Genes
Street address No. 25/Ln 2200 Xie-Tu Road
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (1)
GPL14550 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Probe Name Version)
Samples (4)
GSM1197038 LX2_7.2_rep1
GSM1197039 LX2_7.2_rep2
GSM1197040 LX2_6.2_rep1
Relations
BioProject PRJNA213578

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49301_RAW.tar 12.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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