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| Status |
Public on Aug 15, 2014 |
| Title |
p53 shapes genome-wide changes in small non-coding RNA expression during the human DNA damage response |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Small RNA-seq on MCF10A, HCT116 and HCT116p53-/- cell lines after induction of DNA damage (5 Gy Irradiation).
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| |
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| Overall design |
Small RNA-seq on MCF10A, HCT116 and HCT116p53-/- at 4 and 24 hours after induction of DNA damage (5 Gy Irradiation), done in duplicate with respective control (0 hour) using illumina Genome Analyzer IIx
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| |
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| Contributor(s) |
Janky R, Hattori H, Babu MM, Venkitaraman A |
| Citation(s) |
25486198 |
|
Hattori H, Janky R, Nietfeld W, Aerts S, Babu MM, Venkitaraman AR. p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response. Cell Cycle 2014 13(16). https://www.landesbioscience.com/journals/cc/article/29472/
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| Submission date |
Aug 21, 2013 |
| Last update date |
Oct 09, 2019 |
| Contact name |
Rekin's Janky |
| E-mail(s) |
rekins.janky@med.kuleuven.be
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| Organization name |
KU Leuven
|
| Department |
Department of Human Genetics
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| Lab |
Laboratory of Computational Biology
|
| Street address |
Herestraat 49 box 602
|
| City |
Leuven |
| ZIP/Postal code |
3000 |
| Country |
Belgium |
| |
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| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA215929 |
| SRA |
SRP028963 |
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