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| Status |
Public on Jul 27, 2014 |
| Title |
Smad3, Smad4 and TTF-1/NKX2-1 binding sites in H441/A549 lung cancer cell lines |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We evaluated the role of TTF-1/NKX2-1 on Smad3 and Smad4 binding in lung cancer cell lines.
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| Overall design |
Smad3 binding sites in A549 cells and Smad3, Smad4, and TTF-1/NKX2-1 binding sites in H441 cells were determined by ChIP-seq.
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| Contributor(s) |
Isogaya K, Koinuma D, Tsutsumi S, Saito R, Miyazawa K, Aburatani H, Miyazono K |
| Citation(s) |
25060702 |
| Submission date |
Oct 21, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Daizo Koinuma |
| E-mail(s) |
d-koinuma@umin.ac.jp
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| Organization name |
University of Tokyo
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| Department |
Pathology
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| Street address |
Hongo 7-3-1, Bunkyo-ku
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| City |
Tokyo |
| ZIP/Postal code |
113-0033 |
| Country |
Japan |
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| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
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| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE51510 |
Role of TTF-1/NKX2-1, Smad3 and Smad4 on lung cancer cell lines |
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| Relations |
| BioProject |
PRJNA223330 |
| SRA |
SRP031733 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE51509_RAW.tar |
270.3 Mb |
(http)(custom) |
TAR (of BED, WIG) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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