|
| Status |
Public on Feb 12, 2014 |
| Title |
Genome wide analysis of transcriptome wild type and JIL-1 mutant [RNA-seq: 4 samples] |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Comparison of global transcription profiles in salivary glands from wild-type and JIL-1 null mutant larvae revealed that the expression levels of 1539 genes changed at least two-fold in the mutant and that a substantial number (49%) of these genes were upregulated whereas 51% were downregulated.
|
| |
|
| Overall design |
Examination of 2 different transcriptome in 2 genotypes with two replicates.
|
| |
|
| Contributor(s) |
Cai W, Wang C, Li Y, Shen L, Liu S, Yao C, Bao X, Schnable PS, Girton J, Johansen J, Johansen KM |
| Citation(s) |
24598257 |
| Submission date |
Jan 27, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Jorgen Johansen |
| E-mail(s) |
jorgen@iastate.edu
|
| Phone |
5152949783
|
| Organization name |
Iowa State Universtiy
|
| Department |
BBMB
|
| Lab |
Johansen's Lab
|
| Street address |
MBB3142, Iowa State Univeristy
|
| City |
Ames |
| State/province |
Iowa |
| ZIP/Postal code |
50011 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
|
| Samples (4)
|
|
| This SubSeries is part of SuperSeries: |
| GSE41047 |
Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in drosophila |
|
| Relations |
| BioProject |
PRJNA236509 |
| SRA |
SRP035882 |
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