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Series GSE54666 Query DataSets for GSE54666
Status Public on Apr 08, 2015
Title Gene expression in primary human macrophages and foam cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The aim of the experiment was to determine the effects of 48 hours of treatment with oxidized low density lipoprotein (oxLDL) on gene expression in primary human monocyte-derived macrophages.
 
Overall design 6 independent biological replicates were processed. From each replicate half of the cells were treated with oxLDL and the other half were treated with the control buffer.
For foam cell formation (after 7 days) macrophages were treated with oxLDL (50mcg/ml, enodtoxin free, Copper oxidized). Control macrophages were treated with a matching buffer without oxLDL. Treatment duration - 48 hours.
 
Contributor(s) Reschen ME, O'Callaghan C
Citation(s) 25835000
Submission date Feb 04, 2014
Last update date Aug 13, 2018
Contact name Christopher O'Callaghan
E-mail(s) chris.ocallaghan@ndm.ox.ac.uk
Phone +44 (0)1865 287794
Organization name University of Oxford
Department Nuffield Department of Medicine
Lab O'Callaghan Lab - Henry Wellcome Building for Molecular Physiology
Street address Roosevelt Drive
City Oxford
State/province Oxfordshire
ZIP/Postal code OX3 7BN
Country United Kingdom
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (12)
GSM1321503 Macrophage-oxLDL-1
GSM1321504 Macrophage-control-1
GSM1321505 Macrophage-oxLDL-2
This SubSeries is part of SuperSeries:
GSE54975 Lipid-induced epigenomic changes in human macrophages identify a coronary artery disease associated variant that regulates PPAP2B expression through altered C/EBP-beta binding
Relations
BioProject PRJNA237314

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54666_ControlProbeProfile_reschen.txt.gz 72.8 Kb (ftp)(http) TXT
GSE54666_RAW.tar 26.2 Mb (http)(custom) TAR
GSE54666_non-normalized_data.txt.gz 3.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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