 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 12, 2006 |
| Title |
Expression data from Rat liver 48 hours after treated with different toxic compounds. |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by array
|
| Summary |
Rat has been treated with different compounds with the purpose of investigating toxicological mechanisms. But toxic and non-toxic compounds has been administered. 3 toxic (ANIT, DMN, NMF) 3 non-tox (Caerulein, dinitrophenol(DNP), Rosiglitazone) in 5-plicates (30 arrays in all) and 9 untreated (control), 39 samples in all.
The array data was used to identify genes with biomarker potential for detecting toxic properties of compounds.
Keywords: other
|
| |
|
| Overall design |
Rats was treated with different compounds and RNA from liver was extracyed after 48 hours. Microarrays (GeneChip Rat230 version 2) was run on the RNA
|
| |
|
| Contributor(s) |
Spicker JS |
| Citation(s) |
18178960 |
| Submission date |
Aug 11, 2006 |
| Last update date |
Jul 31, 2017 |
| Contact name |
Jeppe Skytte Spicker |
| E-mail(s) |
skytte@cbs.dtu.dk
|
| Organization name |
Danish University of Technology
|
| Department |
CBS
|
| Street address |
Building 208
|
| City |
Lundtofte |
| ZIP/Postal code |
XXXX |
| Country |
Denmark |
| |
|
| Platforms (1) |
| GPL1355 |
[Rat230_2] Affymetrix Rat Genome 230 2.0 Array |
|
| Samples (39)
|
| GSM127049 |
Rat liver, treated with ANIT, 125 mg/kg in corn oil per orally, extrated 48 hours after treatment, biological rep1 |
| GSM127050 |
Rat liver, treated with ANIT, 125 mg/kg in corn oil per orally, extrated 48 hours after treatment, biological rep2 |
| GSM127051 |
Rat liver, treated with ANIT, 125 mg/kg in corn oil per orally, extrated 48 hours after treatment, biological rep3 |
| GSM127052 |
Rat liver, treated with ANIT, 125 mg/kg in corn oil per orally, extrated 48 hours after treatment, biological rep4 |
| GSM127053 |
Rat liver, treated with ANIT, 125 mg/kg in corn oil per orally, extrated 48 hours after treatment, biological rep5 |
| GSM127054 |
Rat liver, treated with Caerulein, 50 µg/kg in saline i.p., extrated 48 hours after treatment, biological rep1 |
| GSM127055 |
Rat liver, treated with Caerulein, 50 µg/kg in saline i.p., extrated 48 hours after treatment, biological rep2 |
| GSM127056 |
Rat liver, treated with Caerulein, 50 µg/kg in saline i.p., extrated 48 hours after treatment, biological rep3 |
| GSM127057 |
Rat liver, treated with Caerulein, 50 µg/kg in saline i.p., extrated 48 hours after treatment, biological rep4 |
| GSM127058 |
Rat liver, treated with Caerulein, 50 µg/kg in saline i.p., extrated 48 hours after treatment, biological rep5 |
| GSM127059 |
Rat liver, treated with DMN, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep1 |
| GSM127060 |
Rat liver, treated with DMN, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep2 |
| GSM127061 |
Rat liver, treated with DMN, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep3 |
| GSM127062 |
Rat liver, treated with DMN, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep4 |
| GSM127063 |
Rat liver, treated with DMN, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep5 |
| GSM127064 |
Rat liver, treated with DNP, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep1 |
| GSM127065 |
Rat liver, treated with DNP, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep2 |
| GSM127066 |
Rat liver, treated with DNP, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep3 |
| GSM127067 |
Rat liver, treated with DNP, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep4 |
| GSM127068 |
Rat liver, treated with DNP, 15 mg/kg in water per orally, extrated 48 hours after treatment, biological rep5 |
| GSM127069 |
Rat liver, treated with NMF, 1000 mg/kg in saline i.p., extrated 48 hours after treatment, biological rep1 |
| GSM127070 |
Rat liver, treated with NMF, 1000 mg/kg in saline i.p., extrated 48 hours after treatment, biological rep2 |
| GSM127071 |
Rat liver, treated with NMF, 1000 mg/kg in saline i.p., extrated 48 hours after treatment, biological rep3 |
| GSM127072 |
Rat liver, treated with NMF, 1000 mg/kg in saline i.p., extrated 48 hours after treatment, biological rep4 |
| GSM127073 |
Rat liver, treated with NMF, 1000 mg/kg in saline i.p., extrated 48 hours after treatment, biological rep5 |
| GSM127074 |
treated with Roziglitazone, 1000 mg/kg in Methylcellulose soln per orally, extracted 48h after treatment, biol. rep1 |
| GSM127075 |
treated with Roziglitazone, 1000 mg/kg in Methylcellulose soln per orally, extracted 48h after treatment, biol. rep2 |
| GSM127076 |
treated with Roziglitazone, 1000 mg/kg in Methylcellulose soln per orally, extracted 48h after treatment, biol. rep3 |
| GSM127077 |
treated with Roziglitazone, 1000 mg/kg in Methylcellulose soln per orally, extracted 48h after treatment, biol. rep4 |
| GSM127078 |
treated with Roziglitazone, 1000 mg/kg in Methylcellulose soln per orally, extracted 48h after treatment, biol. rep5 |
| GSM127079 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep1 |
| GSM127080 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep2 |
| GSM127081 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep3 |
| GSM127082 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep4 |
| GSM127083 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep5 |
| GSM127084 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep6 |
| GSM127085 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep7 |
| GSM127086 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep8 |
| GSM127087 |
Rat liver, untreated (control), extrated 48 hours after treatment (no treatment in this case), biological rep9 |
|
| Relations |
| BioProject |
PRJNA96069 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE5509_RAW.tar |
162.1 Mb |
(http)(custom) |
TAR (of CEL) |
|
|
|
|
 |
Less...
More...