|
| Status |
Public on Aug 07, 2015 |
| Title |
Desmoplastic Melanoma |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by genome tiling array
|
| Summary |
High resolution aCGH was performed on 10 primary Desmoplastic Melanomas (DMs). DMs are a rare subtype of melanoma known for their pronounced desmoplastic stroma and spindled melanocytes. 10 samples were hybridized to Agilent 1 Million feature two color arrays as compared to a panel of normal male DNA. 6 samples were hybridized to Agilent 244K feature two color arrays as compared to a panel of normal male DNA. 34 samples were hybridized to Agilent 180K feature two color arrays as compared to a panel of normal male DNA.
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| |
|
| Overall design |
50 unique primary tumors were hybridized compared to normal male DNA.
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| |
|
| Contributor(s) |
Shain AH, Bastian BC |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Feb 19, 2014 |
| Last update date |
Oct 26, 2016 |
| Contact name |
Alan Hunter Shain |
| E-mail(s) |
hshain@gmail.com
|
| Organization name |
University of California San Francisco
|
| Department |
Pathology and Dermatology
|
| Lab |
Boris Bastian
|
| Street address |
555 MISSION BAY SOUTH BLVD RM 282 # 3118
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158-2156 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL4091 |
Agilent-014693 Human Genome CGH Microarray 244A (Feature number version) |
| GPL8736 |
Agilent-021529 Human CGH Whole Genome Microarray 1x1M (G4447A) (Feature Number version) |
| GPL10123 |
Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version) |
|
| Samples (50)
|
|
| Relations |
| BioProject |
PRJNA238646 |
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