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Series GSE56394 Query DataSets for GSE56394
Status Public on May 02, 2014
Title Dual and separable roles for Ezh2 in neurogenic astroglia
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The epigenetic mechanisms that enable specialized astrocytes to retain neurogenic competence throughout adult life are still poorly understood. Here we show that astrocytes that serve as neural stem cells (NSCs) in the adult mouse subventricular zone (SVZ) express the histone methyltransferase EZH2. This Polycomb repressive factor is required for neurogenesis independent of its role in SVZ NSC proliferation, as Ink4a/Arf-deficiency in Ezh2-deleted SVZ NSCs rescues cell proliferation, but neurogenesis remains defective. Olig2 is a direct target of EZH2, and repression of this bHLH transcription factor is critical for neuronal differentiation. Furthermore, Ezh2 prevents the inappropriate activation of genes that specify non-SVZ neuronal subtypes. In the human brain, SVZ cells including local astroglia also express EZH2, correlating with postnatal neurogenesis. Thus, EZH2 is an epigenetic regulator that distinguishes neurogenic SVZ astrocytes, orchestrating distinct and separable aspects of adult stem cell biology, which has important implications for regenerative medicine and oncogenesis.
 
Overall design Examination of histone modifications (H3K27me3 and H3K4me3) in subventricular zone neural stem cells
 
Contributor(s) Lim DA, Hwang WW, Salinas RD, Delgado RN
Citation(s) 24867641
Submission date Apr 01, 2014
Last update date May 15, 2019
Contact name Daniel A Lim
E-mail(s) LimD@neurosurg.ucsf.edu
Phone 415-353-3935
Organization name University of California, San Francisco
Department Neurological Surgery
Lab Lim Lab
Street address 35 Medical Center Way RMB 933B
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (6)
GSM1360738 H3K27me3_ChIPSeqN6
GSM1360739 Input DNA N6
GSM1360740 H3K27me3_ChIPSeqN5
Relations
BioProject PRJNA243128
SRA SRP040763

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56394_RAW.tar 1.5 Gb (http)(custom) TAR (of TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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