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Series GSE56857 Query DataSets for GSE56857
Status Public on Jun 03, 2014
Title SPIB and BATF provide alternate determinants of IRF4 occupancy in Diffuse Large B-cell Lymphoma linked to disease heterogeneity
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq data for the transcription factors (TFs) IRF4, PU.1 and SPIB from the cell lines OCI-LY3, OCI-LY10 and H929, and BATF from the cell lines OCI-Ly3 and OCI-Ly10. In addition ChIP-seq for the TFs IRF4, PU.1 and SPIB from the cell line OCI-LY3 following transfections of scramble/SPIB-siRNA.
 
Overall design ChIP-seq data for the transcription factors (TFs) IRF4, PU.1 and SPIB from the cell lines OCI-LY3, OCI-LY10 and H929, and BATF from the cell lines OCI-Ly3 and OCI-Ly10. In addition ChIP-seq for the TFs IRF4, PU.1 and SPIB from the cell line OCI-LY3 following transfections of scramble/SPIB-siRNA.
 
Contributor(s) Care MA, Cocco M, Tooze RM
Citation(s) 24875472
Submission date Apr 16, 2014
Last update date May 15, 2019
Contact name Matthew Anthony Care
E-mail(s) matthew.care@york.ac.uk
Organization name The University of York
Department Department of Biology
Lab Bioscience Technology Facility, Data Science Hub
Street address Wentworth Way
City York
State/province North Yorkshire
ZIP/Postal code YO10 5DD
Country United Kingdom
 
Platforms (2)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (22)
GSM1370272 OCILY3_BATF
GSM1370273 OCILY3_Input
GSM1370274 OCILY3_IRF4
Relations
BioProject PRJNA244778
SRA SRP041224

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56857_RAW.tar 1.6 Gb (http)(custom) TAR (of BED, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data not provided for this record
Processed data provided as supplementary file

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