|
| Status |
Public on Nov 06, 2014 |
| Title |
HeLa cell polyA- RNA-seq |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Coilin iCLIP data revealed 42 novel human snoRNAs of intronic origin. To validate their expression and estimate abundance of novel and annotated snoRNAs, we performed RNA-seq on polyA- and rRNA-depleted RNA isolated from HeLa cells. Results show that expression of novel snoRNAs is comparable to the previously annotated snoRNAs.
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| |
|
| Overall design |
1 replicate of RNA depleted of polyA and ribosomal RNA.
|
| |
|
| Contributor(s) |
Machyna M, Neugebauer KM |
| Citation(s) |
25514182 |
| Submission date |
Jun 13, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Karla Neugebauer |
| E-mail(s) |
karla.neugebauer@yale.edu
|
| Organization name |
Yale University
|
| Department |
Molecular Biophysics & Biochemistry
|
| Street address |
333 Cedar Street
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (1) |
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| This SubSeries is part of SuperSeries: |
| GSE58451 |
Coilin's RNA, DNA and protein interactomes redefine the Cajal body as a hub for small non-coding RNAs |
|
| Relations |
| BioProject |
PRJNA252665 |
| SRA |
SRP043188 |
