|
| Status |
Public on Oct 01, 2015 |
| Title |
High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila |
| Organism |
Drosophila melanogaster |
| Experiment type |
Other
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Hi-C analysis of two Drosophila male cell lines, combined with 4C-seq of frequent long-range contacts between HAS.
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| |
|
| Overall design |
We carried out Hi-C experiments in the male Drosophila melanogaster cell lines S2 and clone8, both in biological duplicates. Analyses were complemented by 4C-seq and S2 and female Kc cells and with DNA FISH.
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| |
|
| Contributor(s) |
Ramírez F, Lingg T, Toscano S, Lam KC, Plamen G, Ho-Ryung C, Lajoie B, de Wit E, Zhang Y, de Laat W, Dekker J, Manke T, Akhtar A |
| Citation(s) |
26431028 |
| Submission date |
Jun 25, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Fidel Ramirez |
| Organization name |
Max Planck Institute for Immunobiology and Epigenetics
|
| Department |
Bioinformatics Unit
|
| Street address |
Stübeweg 51
|
| City |
Freiburg |
| ZIP/Postal code |
79108 |
| Country |
Germany |
| |
|
| Platforms (4)
|
| GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
| GPL9061 |
Illumina Genome Analyzer II (Drosophila melanogaster) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
| GPL17275 |
Illumina HiSeq 2500 (Drosophila melanogaster) |
|
| Samples (100)
|
|
| Relations |
| BioProject |
PRJNA253592 |
| SRA |
SRP043568 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE58821_RAW.tar |
2.7 Gb |
(http)(custom) |
TAR (of BIGWIG, BW, TXT) |
| GSE58821_c8_merge_C-25000.txt.gz |
99.3 Mb |
(ftp)(http) |
TXT |
| GSE58821_c8_merge_H-10000.txt.gz |
321.9 Mb |
(ftp)(http) |
TXT |
| GSE58821_c8_merge_L-100000.txt.gz |
7.2 Mb |
(ftp)(http) |
TXT |
| GSE58821_c8_merge_M-50000.txt.gz |
28.0 Mb |
(ftp)(http) |
TXT |
| GSE58821_clone_8_boundaries.bed.gz |
41.7 Kb |
(ftp)(http) |
BED |
| GSE58821_s2_boundaries.bed.gz |
23.8 Kb |
(ftp)(http) |
BED |
| GSE58821_s2_merge_C-25000.txt.gz |
81.8 Mb |
(ftp)(http) |
TXT |
| GSE58821_s2_merge_H-10000.txt.gz |
171.7 Mb |
(ftp)(http) |
TXT |
| GSE58821_s2_merge_L-100000.txt.gz |
7.4 Mb |
(ftp)(http) |
TXT |
| GSE58821_s2_merge_M-50000.txt.gz |
28.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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