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Series GSE58994 Query DataSets for GSE58994
Status Public on Jul 02, 2014
Title Expression data from primary human leukocytes (peropheral blood mononuclear cells, PBMC) cultured in vitro with HIV-1MN, HIV-2NIH-Z, CpG-A ODN or media alone
Organism Homo sapiens
Experiment type Expression profiling by array
Summary HIV-1 and HIV-2 can both infect humans, but HIV-2 causes a slow progressing disease and is well controlled by the immune system for prolonged period of times.
Here we tested acute response aainst HIV-1 and HIV-2 exposure in peripheral blood mononuclear cells (PBMC) from three indepednent donors.
 
Overall design A total of 24 samples were analyzed. PBMC from three donors were cultured with Media alone, HIV-1MN, HIV-2NIH-Z or the TLR9 agonist CpG-A (4 conditions), and cells were harvested at 6h and 12h (2time points) for RNA extraction.
 
Contributor(s) Royle CM, Graham DR, Sharma S, Fuchs D, Boasso A
Citation(s) 25156368
Submission date Jul 01, 2014
Last update date Mar 15, 2019
Contact name Adriano Boasso
E-mail(s) a.boasso@imperial.ac.uk
Organization name Imperial College London
Department Immunology at Chelsea and Westminster Hospital
Street address 369 Fulham road
City London
ZIP/Postal code SW10 9NH
Country United Kingdom
 
Platforms (1)
GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
Samples (24)
GSM1423557 PBMC from Donor A at 6h in Media
GSM1423558 PBMC from Donor A at 6h with HIV-1
GSM1423559 PBMC from Donor A at 6h with HIV-2
Relations
BioProject PRJNA254068

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58994_RAW.tar 201.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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