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Status |
Public on Dec 30, 2016 |
Title |
mRNA expression in human DAOY cells |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
We generate ZNF423 knockdown and control DAOY cells with lentivirus that co-expressed the fluorescent protein mCherry. We performed whole genome RNA sequencing (RNA-seq) of three batched of cultured ZNF423 KD or control KD cells. The sequence reads were analyzed by Homer followed by edgeR. The analyzed RNA-seq results showed differential expression profile including 12 known cilia genes, and 3 of these were validated with qRT-PCR on mouse granule cell precursors. This study proved data how ZNF423 linked to cilia complexes.
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Overall design |
RNA-seq in three batched of control and ZNF423 KD cells(generated by lentivirus delivered shRNA targeting ZNF423 sequence).
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Contributor(s) |
Hamilton BA, Hong C |
Citation(s) |
27727273 |
Submission date |
Jul 18, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Bruce Hamilton |
E-mail(s) |
bah@ucsd.edu
|
Phone |
8588222298
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Organization name |
UC San Diego
|
Department |
Medicine
|
Lab |
CMM
|
Street address |
9500 Gilman Dr.
|
City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92093 |
Country |
USA |
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Platforms (1) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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Samples (6)
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Relations |
BioProject |
PRJNA255674 |
SRA |
SRP044651 |