|
| Status |
Public on Jun 17, 2015 |
| Title |
Identification of lineage-specific cis-regulatory modules associated with variation in transcription factor binding and chromatin activity using Ornstein-Uhlenbeck models |
| Organisms |
Drosophila melanogaster; Drosophila pseudoobscura; Drosophila virilis |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Whole-chromatin profile (FAIRE-seq) in three Drosophila species (D. melanogaster, D. pseudoobscura and D. virilis) in eye-antennal imaginal discs at the stage of third instar wandering larvae.
|
| |
|
| Overall design |
By the use of Ornstein-Uhlenbeck methods, we assess the evolutionary forces acting on regulatory elements (cis-level) on chromatin activity across Drosophila eye-antennal imaginal discs at the stage of third instar larvae.
|
| |
|
| Contributor(s) |
Naval-Sánchez M, Potier D, Hulselmans G, Christiaens V, Aerts S |
| Citation(s) |
25944915 |
| Submission date |
Jul 23, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Stein Aerts |
| Organization name |
KULeuven
|
| Department |
Center for Human Genetics
|
| Lab |
Laboratory of Computational Biology
|
| Street address |
Herestraat 49
|
| City |
Leuven |
| ZIP/Postal code |
3000 |
| Country |
Belgium |
| |
|
| Platforms (3) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
| GPL13310 |
Illumina HiSeq 2000 (Drosophila pseudoobscura) |
| GPL13313 |
Illumina HiSeq 2000 (Drosophila virilis) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA256001 |
| SRA |
SRP044760 |
Less...
More...